Difference between revisions of "TSS:Hg 104057.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=708 |entrez_id=100507347 |gc_percent=0.691542 |gene_alias=- |gene_description=VIM antisense RNA 1 |gene_name=VIM-AS1 |gene_type=n...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000224237.9:0 ENST00000487938.5:0 uc057sbc.1:0 uc057sbd.1:0 AK222507:0 AK222602:0 AK056766:0 AK091813:0 AK097336:0 AK098444:0 EU794672:0 X16478:0 AK222482:0 ENST00000485947.1:4 uc057sbe.1:4 AF328728:8 BC030573:12 BC000163:12 Z19554:17 X56134:93 AK290643:111 AB590763:133 CU674070:135 KJ892377:135 CR407690:136 KU178388:136 KU178389:136 ENST00000497849.1:-399 uc057sbb.1:-399 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=0 | ||
|distance_to_tss=708 | |distance_to_tss=708 | ||
| + | |end=17229287 | ||
|entrez_id=100507347 | |entrez_id=100507347 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=VIM antisense RNA 1 | |gene_description=VIM antisense RNA 1 | ||
| − | |gene_name=VIM | + | |gene_id=7431 |
| + | |gene_name=vimentin | ||
| + | |gene_source=HGNC:12692 | ||
| + | |gene_symbol=VIM | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:12692 | ||
|nearest_ensembl=ENSG00000229124 | |nearest_ensembl=ENSG00000229124 | ||
|nearest_promoter_id=NR_108061 | |nearest_promoter_id=NR_108061 | ||
|nearest_refseq=NR_108060 | |nearest_refseq=NR_108060 | ||
|nearest_unigene=Hs.740502 | |nearest_unigene=Hs.740502 | ||
| + | |num_trans=29 | ||
| + | |species=human | ||
| + | |start=17229267 | ||
| + | |strand=+ | ||
|tata_box="-34(GGTTATAAAAAC,-,0.00)" | |tata_box="-34(GGTTATAAAAAC,-,0.00)" | ||
| + | |transcript_name=ENST00000224237.9 ENST00000487938.5 uc057sbc.1 uc057sbd.1 AK222507 AK222602 AK056766 AK091813 AK097336 AK098444 EU794672 X16478 AK222482 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104057.1 | |tss_id=hg_104057.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B0YJC4 B3KRK8 Q53HU8 V9HWE1 | ||
}} | }} | ||
Revision as of 20:36, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000224237.9 ENST00000487938.5 uc057sbc.1 uc057sbd.1 AK222507 AK222602 AK056766 AK091813 AK097336 AK098444 EU794672 X16478 AK222482 |
|---|---|
| Distance: | 0 |
| Num_trans: | 29 |
| All_trans: | ENST00000224237.9:0 ENST00000487938.5:0 uc057sbc.1:0 uc057sbd.1:0 AK222507:0 AK222602:0 AK056766:0 AK091813:0 AK097336:0 AK098444:0 EU794672:0 X16478:0 AK222482:0 ENST00000485947.1:4 uc057sbe.1:4 AF328728:8 BC030573:12 BC000163:12 Z19554:17 X56134:93 AK290643:111 AB590763:133 CU674070:135 KJ892377:135 CR407690:136 KU178388:136 KU178389:136 ENST00000497849.1:-399 uc057sbb.1:-399 |
TATA-Box annotation
| Distance to TSS: | 708 |
|---|---|
| Nearest PromoterID: | NR_108061 |
| Entrez ID: | 100507347 |
| Nearest Unigene: | Hs.740502 |
| Nearest Refseq: | NR_108060 |
| Nearest Ensembl: | ENSG00000229124 |
| Gene Name: | vimentin |
| Gene Alias: | - |
| Gene Description: | VIM antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.1 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-34(GGTTATAAAAAC,-,0.00)" |
