Difference between revisions of "TSS:Hg 104088.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.04 |distance_to_tss=52 |entrez_id=100128098 |gc_percent=0.552239 |gene_alias=- |gene_description=ST8SIA6 antisense RNA 1 |gene_name=ST8SIA6-AS1 |gen...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000451225.2:2 uc057sbk.1:2 BC029655:-17 ENST00000377597.6:-34 uc001ipf.2:-34 AK127982:-34 ENST00000457649.6:-49 NR_034129:-49 uc001ipe.3:-49 BC054478:-49 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| + | |distance=2 | ||
|distance_to_tss=52 | |distance_to_tss=52 | ||
| + | |end=17386992 | ||
|entrez_id=100128098 | |entrez_id=100128098 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=ST8SIA6 antisense RNA 1 | |gene_description=ST8SIA6 antisense RNA 1 | ||
| − | |gene_name=ST8SIA6-AS1 | + | |gene_id=100128098 |
| + | |gene_name=ST8SIA6 antisense RNA 1 | ||
| + | |gene_source=HGNC:44880 | ||
| + | |gene_symbol=ST8SIA6-AS1 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:44880 | ||
|nearest_ensembl=ENSG00000204832 | |nearest_ensembl=ENSG00000204832 | ||
|nearest_promoter_id=NR_034129 | |nearest_promoter_id=NR_034129 | ||
|nearest_refseq=NR_034129 | |nearest_refseq=NR_034129 | ||
|nearest_unigene=Hs.530588 | |nearest_unigene=Hs.530588 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=17386984 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000451225.2 uc057sbk.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104088.1 | |tss_id=hg_104088.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:37, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000451225.2 uc057sbk.1 |
|---|---|
| Distance: | 2 |
| Num_trans: | 10 |
| All_trans: | ENST00000451225.2:2 uc057sbk.1:2 BC029655:-17 ENST00000377597.6:-34 uc001ipf.2:-34 AK127982:-34 ENST00000457649.6:-49 NR_034129:-49 uc001ipe.3:-49 BC054478:-49 |
TATA-Box annotation
| Distance to TSS: | 52 |
|---|---|
| Nearest PromoterID: | NR_034129 |
| Entrez ID: | 100128098 |
| Nearest Unigene: | Hs.530588 |
| Nearest Refseq: | NR_034129 |
| Nearest Ensembl: | ENSG00000204832 |
| Gene Name: | ST8SIA6 antisense RNA 1 |
| Gene Alias: | - |
| Gene Description: | ST8SIA6 antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.04 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
