Difference between revisions of "TSS:Hg 104101.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=40804 |entrez_id=8027 |gc_percent=0.308458 |gene_alias=STAM-1|STAM1 |gene_description=signal transducing adaptor molecule |gene...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |STAM1= | ||
| + | |all_trans=ENST00000486183.1:-142 uc057sbr.1:-142 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=-142 | ||
|distance_to_tss=40804 | |distance_to_tss=40804 | ||
| + | |end=17684931 | ||
|entrez_id=8027 | |entrez_id=8027 | ||
|gc_percent=0.308458 | |gc_percent=0.308458 | ||
|gene_alias=STAM-1|STAM1 | |gene_alias=STAM-1|STAM1 | ||
|gene_description=signal transducing adaptor molecule | |gene_description=signal transducing adaptor molecule | ||
| − | |gene_name=STAM | + | |gene_id=8027 |
| + | |gene_name=signal transducing adaptor molecule | ||
| + | |gene_source=HGNC:11357 | ||
| + | |gene_symbol=STAM | ||
| + | |gene_synonyms=STAM1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11357 | ||
|nearest_ensembl=ENSG00000136738 | |nearest_ensembl=ENSG00000136738 | ||
|nearest_promoter_id=NM_001324288 | |nearest_promoter_id=NM_001324288 | ||
|nearest_refseq=NM_003473 | |nearest_refseq=NM_003473 | ||
|nearest_unigene=Hs.335391 | |nearest_unigene=Hs.335391 | ||
| + | |num_trans=2 | ||
| + | |species=human | ||
| + | |start=17684926 | ||
| + | |strand=+ | ||
|tata_box="87(TGCTTTTTAAGA,-,0.00)" | |tata_box="87(TGCTTTTTAAGA,-,0.00)" | ||
| + | |transcript_name=ENST00000486183.1 uc057sbr.1 | ||
| + | |tss_classification=no | ||
|tss_id=hg_104101.1 | |tss_id=hg_104101.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:38, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000486183.1 uc057sbr.1 |
|---|---|
| Distance: | -142 |
| Num_trans: | 2 |
| All_trans: | ENST00000486183.1:-142 uc057sbr.1:-142 |
TATA-Box annotation
| Distance to TSS: | 40804 |
|---|---|
| Nearest PromoterID: | NM_001324288 |
| Entrez ID: | 8027 |
| Nearest Unigene: | Hs.335391 |
| Nearest Refseq: | NM_003473 |
| Nearest Ensembl: | ENSG00000136738 |
| Gene Name: | signal transducing adaptor molecule |
| Gene Alias: | STAM-1 |
| Gene Description: | signal transducing adaptor molecule |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.308458 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "87(TGCTTTTTAAGA,-,0.00)" |
