Difference between revisions of "TSS:Hg 104109.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=137 |entrez_id=221074 |gc_percent=0.383085 |gene_alias=LZT-Hs8|ZIP-12|bA570F3.1 |gene_description=solute carrier family 39 memb...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |ZIP-12= | ||
| + | |all_trans=AK295294:-8 BC094700:-8 BC047635:-44 ENST00000377371.3:-57 uc001ipp.3:-57 BC035118:-57 ENST00000377374.8:-79 uc001ipn.3:-79 AK055061:-79 ENST00000539911.5:-132 ENST00000377369.6:-132 NM_001145195:-132 NM_001282734:-132 NM_001282733:-132 NM_152725:-132 uc001ipo.2:-132 uc010qck.1:-132 | ||
| + | |bA570F3.1= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=-8 | ||
|distance_to_tss=137 | |distance_to_tss=137 | ||
| + | |end=17951982 | ||
|entrez_id=221074 | |entrez_id=221074 | ||
|gc_percent=0.383085 | |gc_percent=0.383085 | ||
|gene_alias=LZT-Hs8|ZIP-12|bA570F3.1 | |gene_alias=LZT-Hs8|ZIP-12|bA570F3.1 | ||
|gene_description=solute carrier family 39 member 12 | |gene_description=solute carrier family 39 member 12 | ||
| − | |gene_name=SLC39A12 | + | |gene_id=221074 |
| + | |gene_name=solute carrier family 39 member 12 | ||
| + | |gene_source=HGNC:20860 | ||
| + | |gene_symbol=SLC39A12 | ||
| + | |gene_synonyms=FLJ30499 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:20860 | ||
|nearest_ensembl=ENSG00000148482 | |nearest_ensembl=ENSG00000148482 | ||
|nearest_promoter_id=NM_152725 | |nearest_promoter_id=NM_152725 | ||
|nearest_refseq=NM_152725 | |nearest_refseq=NM_152725 | ||
|nearest_unigene=Hs.350895 | |nearest_unigene=Hs.350895 | ||
| + | |num_trans=17 | ||
| + | |species=human | ||
| + | |start=17951970 | ||
| + | |strand=+ | ||
|tata_box="-5(GGATTTAAAAGG,-,0.00)" | |tata_box="-5(GGATTTAAAAGG,-,0.00)" | ||
| + | |transcript_name=AK295294 BC094700 | ||
| + | |tss_classification=no | ||
|tss_id=hg_104109.1 | |tss_id=hg_104109.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:38, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK295294 BC094700 |
|---|---|
| Distance: | -8 |
| Num_trans: | 17 |
| All_trans: | AK295294:-8 BC094700:-8 BC047635:-44 ENST00000377371.3:-57 uc001ipp.3:-57 BC035118:-57 ENST00000377374.8:-79 uc001ipn.3:-79 AK055061:-79 ENST00000539911.5:-132 ENST00000377369.6:-132 NM_001145195:-132 NM_001282734:-132 NM_001282733:-132 NM_152725:-132 uc001ipo.2:-132 uc010qck.1:-132 |
TATA-Box annotation
| Distance to TSS: | 137 |
|---|---|
| Nearest PromoterID: | NM_152725 |
| Entrez ID: | 221074 |
| Nearest Unigene: | Hs.350895 |
| Nearest Refseq: | NM_152725 |
| Nearest Ensembl: | ENSG00000148482 |
| Gene Name: | solute carrier family 39 member 12 |
| Gene Alias: | LZT-Hs8 |
| Gene Description: | solute carrier family 39 member 12 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.383085 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-5(GGATTTAAAAGG,-,0.00)" |
