Difference between revisions of "TSS:Hg 10413.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=-44 |entrez_id=126755 |gc_percent=0.716418 |gene_alias=- |gene_description=leucine rich repeat containing 38 |gene_name=LRRC38 |g...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=NM_001010847:35 BC016048:119 ENST00000376085.3:-248 uc001avb.4:-248 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=35 | ||
|distance_to_tss=-44 | |distance_to_tss=-44 | ||
| + | |end=13513800 | ||
|entrez_id=126755 | |entrez_id=126755 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=leucine rich repeat containing 38 | |gene_description=leucine rich repeat containing 38 | ||
| − | |gene_name=LRRC38 | + | |gene_id=126755 |
| + | |gene_name=leucine rich repeat containing 38 | ||
| + | |gene_source=HGNC:27005 | ||
| + | |gene_symbol=LRRC38 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:27005 | ||
|nearest_ensembl=ENSG00000162494 | |nearest_ensembl=ENSG00000162494 | ||
|nearest_promoter_id=NM_001010847 | |nearest_promoter_id=NM_001010847 | ||
|nearest_refseq=NM_001010847 | |nearest_refseq=NM_001010847 | ||
|nearest_unigene=Hs.657356 | |nearest_unigene=Hs.657356 | ||
| + | |num_trans=4 | ||
| + | |species=human | ||
| + | |start=13513781 | ||
| + | |strand=- | ||
| + | |transcript_name=NM_001010847 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10413.1 | |tss_id=hg_10413.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5VT99 | ||
}} | }} | ||
Revision as of 20:39, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001010847 |
|---|---|
| Distance: | 35 |
| Num_trans: | 4 |
| All_trans: | NM_001010847:35 BC016048:119 ENST00000376085.3:-248 uc001avb.4:-248 |
TATA-Box annotation
| Distance to TSS: | -44 |
|---|---|
| Nearest PromoterID: | NM_001010847 |
| Entrez ID: | 126755 |
| Nearest Unigene: | Hs.657356 |
| Nearest Refseq: | NM_001010847 |
| Nearest Ensembl: | ENSG00000162494 |
| Gene Name: | leucine rich repeat containing 38 |
| Gene Alias: | - |
| Gene Description: | leucine rich repeat containing 38 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
