Difference between revisions of "TSS:Hg 104130.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=81 |entrez_id=783 |gc_percent=0.452736 |gene_alias=CACNLB2|CAVB2|MYSB |gene_description=calcium voltage-gated channel auxiliary...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CAVB2= | ||
| + | |MYSB= | ||
| + | |all_trans=ENST00000377329.8:-10 uc001ipy.3:-10 ENST00000498816.1:-30 uc057scg.1:-30 NM_201590:-62 AK310943:-62 ENST00000612743.1:136 uc057sch.1:136 AY675092:140 ENST00000612134.4:141 uc057sci.1:141 AY393863:141 AF285239:141 AY393859:141 AY393862:141 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=-10 | ||
|distance_to_tss=81 | |distance_to_tss=81 | ||
| + | |end=18340786 | ||
|entrez_id=783 | |entrez_id=783 | ||
|gc_percent=0.452736 | |gc_percent=0.452736 | ||
|gene_alias=CACNLB2|CAVB2|MYSB | |gene_alias=CACNLB2|CAVB2|MYSB | ||
|gene_description=calcium voltage-gated channel auxiliary subunit beta 2 | |gene_description=calcium voltage-gated channel auxiliary subunit beta 2 | ||
| − | |gene_name=CACNB2 | + | |gene_id=783 |
| + | |gene_name=calcium voltage-gated channel auxiliary subunit beta 2 | ||
| + | |gene_source=HGNC:1402 | ||
| + | |gene_symbol=CACNB2 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:1402 | ||
|nearest_ensembl=ENSG00000165995 | |nearest_ensembl=ENSG00000165995 | ||
|nearest_promoter_id=NM_201590 | |nearest_promoter_id=NM_201590 | ||
|nearest_refseq=NM_000724 | |nearest_refseq=NM_000724 | ||
|nearest_unigene=Hs.59093 | |nearest_unigene=Hs.59093 | ||
| + | |num_trans=15 | ||
| + | |species=human | ||
| + | |start=18340746 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000377329.8 uc001ipy.3 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104130.1 | |tss_id=hg_104130.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q08289 | ||
}} | }} | ||
Revision as of 20:39, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000377329.8 uc001ipy.3 |
|---|---|
| Distance: | -10 |
| Num_trans: | 15 |
| All_trans: | ENST00000377329.8:-10 uc001ipy.3:-10 ENST00000498816.1:-30 uc057scg.1:-30 NM_201590:-62 AK310943:-62 ENST00000612743.1:136 uc057sch.1:136 AY675092:140 ENST00000612134.4:141 uc057sci.1:141 AY393863:141 AF285239:141 AY393859:141 AY393862:141 |
TATA-Box annotation
| Distance to TSS: | 81 |
|---|---|
| Nearest PromoterID: | NM_201590 |
| Entrez ID: | 783 |
| Nearest Unigene: | Hs.59093 |
| Nearest Refseq: | NM_000724 |
| Nearest Ensembl: | ENSG00000165995 |
| Gene Name: | calcium voltage-gated channel auxiliary subunit beta 2 |
| Gene Alias: | CACNLB2 |
| Gene Description: | calcium voltage-gated channel auxiliary subunit beta 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.452736 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
