Difference between revisions of "TSS:Hg 104171.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.05 |distance_to_tss=185 |entrez_id=84898 |gc_percent=0.572139 |gene_alias=TEM7R |gene_description=plexin domain containing 2 |gene_name=PLXDC2 |gene...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=NM_001282736:-182 NM_032812:-182 AY358486:-182 AK304591:-188 BC012885:206 ENST00000377242.7:-386 ENST00000377252.4:-386 uc001iqh.3:-386 uc001iqg.3:-386 AF378757:440 CU680430:446 KJ903482:446 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| + | |distance=-182 | ||
|distance_to_tss=185 | |distance_to_tss=185 | ||
| + | |end=19816631 | ||
|entrez_id=84898 | |entrez_id=84898 | ||
|gc_percent=0.572139 | |gc_percent=0.572139 | ||
|gene_alias=TEM7R | |gene_alias=TEM7R | ||
|gene_description=plexin domain containing 2 | |gene_description=plexin domain containing 2 | ||
| − | |gene_name=PLXDC2 | + | |gene_id=84898 |
| + | |gene_name=plexin domain containing 2 | ||
| + | |gene_source=HGNC:21013 | ||
| + | |gene_symbol=PLXDC2 | ||
| + | |gene_synonyms=FLJ14623 TEM7R | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:21013 | ||
|nearest_ensembl=ENSG00000120594 | |nearest_ensembl=ENSG00000120594 | ||
|nearest_promoter_id=NM_032812 | |nearest_promoter_id=NM_032812 | ||
|nearest_refseq=NM_032812 | |nearest_refseq=NM_032812 | ||
|nearest_unigene=Hs.99472 | |nearest_unigene=Hs.99472 | ||
| + | |num_trans=12 | ||
| + | |species=human | ||
| + | |start=19816624 | ||
| + | |strand=+ | ||
| + | |transcript_name=NM_001282736 NM_032812 AY358486 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104171.1 | |tss_id=hg_104171.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q6UX71 | ||
}} | }} | ||
Revision as of 20:41, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001282736 NM_032812 AY358486 |
|---|---|
| Distance: | -182 |
| Num_trans: | 12 |
| All_trans: | NM_001282736:-182 NM_032812:-182 AY358486:-182 AK304591:-188 BC012885:206 ENST00000377242.7:-386 ENST00000377252.4:-386 uc001iqh.3:-386 uc001iqg.3:-386 AF378757:440 CU680430:446 KJ903482:446 |
TATA-Box annotation
| Distance to TSS: | 185 |
|---|---|
| Nearest PromoterID: | NM_032812 |
| Entrez ID: | 84898 |
| Nearest Unigene: | Hs.99472 |
| Nearest Refseq: | NM_032812 |
| Nearest Ensembl: | ENSG00000120594 |
| Gene Name: | plexin domain containing 2 |
| Gene Alias: | TEM7R |
| Gene Description: | plexin domain containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.572139 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
