Difference between revisions of "TSS:Hg 104212.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=U13948:27 ENST00000307729.11:32 uc001iqt.4:32 BC065376:32 BC080577:32 ENST00000377091.6:34 uc001iqr.3:34 ENST00000377072.7:-117 uc001iqs.4:-117 NM_001195630:-118 NM_001195628:-118 NM_004641:-118 NM_001195627:-118 ENST00000377100.7:-125 uc001iqq.3:-125 BC032532:-125 AB209755:155 ENST00000471315.5:157 uc057sdv.1:157 BC052798:163 BC094844:166 BC129946:168 ENST00000495130.5:179 uc057sdw.1:179 ENST00000621220.4:334 ENST00000377059.7:334 NM_001195626:334 uc057sdx.1:334 uc021pny.2:334 CU687346:334 BC156206:334 BC156949:334 AY598745:334 KJ892460:334 ENST00000476557.5:391 uc057sdy.1:391 ENST00000430455.1:438 ENST00000462999.5:438 ENST00000480415.5:438 ENST00000479634.1:438 uc057sdz.1:438 uc009xkf.2:438 uc009xke.2:438 uc001iqx.2:438 AF060927:438 AF060934:438 AF060935:438 AF060936:438 AF060937:438 AF060938:438 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=27 | ||
|distance_to_tss=128 | |distance_to_tss=128 | ||
| + | |end=21534311 | ||
|entrez_id=8028 | |entrez_id=8028 | ||
|gc_percent=0.751244 | |gc_percent=0.751244 | ||
|gene_alias=AF10 | |gene_alias=AF10 | ||
|gene_description="myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10" | |gene_description="myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10" | ||
| − | |gene_name=MLLT10 | + | |gene_id=8028 |
| + | |gene_name="myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10" | ||
| + | |gene_source=HGNC:16063 | ||
| + | |gene_symbol=MLLT10 | ||
| + | |gene_synonyms=AF10 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:16063 | ||
|nearest_ensembl=ENSG00000078403 | |nearest_ensembl=ENSG00000078403 | ||
|nearest_promoter_id=NR_136736 | |nearest_promoter_id=NR_136736 | ||
|nearest_refseq=NM_004641 | |nearest_refseq=NM_004641 | ||
|nearest_unigene=Hs.30385 | |nearest_unigene=Hs.30385 | ||
| + | |num_trans=50 | ||
| + | |species=human | ||
| + | |start=21534289 | ||
| + | |strand=+ | ||
| + | |transcript_name=U13948 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104212.1 | |tss_id=hg_104212.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:42, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | U13948 |
|---|---|
| Distance: | 27 |
| Num_trans: | 50 |
| All_trans: | U13948:27 ENST00000307729.11:32 uc001iqt.4:32 BC065376:32 BC080577:32 ENST00000377091.6:34 uc001iqr.3:34 ENST00000377072.7:-117 uc001iqs.4:-117 NM_001195630:-118 NM_001195628:-118 NM_004641:-118 NM_001195627:-118 ENST00000377100.7:-125 uc001iqq.3:-125 BC032532:-125 AB209755:155 ENST00000471315.5:157 uc057sdv.1:157 BC052798:163 BC094844:166 BC129946:168 ENST00000495130.5:179 uc057sdw.1:179 ENST00000621220.4:334 ENST00000377059.7:334 NM_001195626:334 uc057sdx.1:334 uc021pny.2:334 CU687346:334 BC156206:334 BC156949:334 AY598745:334 KJ892460:334 ENST00000476557.5:391 uc057sdy.1:391 ENST00000430455.1:438 ENST00000462999.5:438 ENST00000480415.5:438 ENST00000479634.1:438 uc057sdz.1:438 uc009xkf.2:438 uc009xke.2:438 uc001iqx.2:438 AF060927:438 AF060934:438 AF060935:438 AF060936:438 AF060937:438 AF060938:438 |
TATA-Box annotation
| Distance to TSS: | 128 |
|---|---|
| Nearest PromoterID: | NR_136736 |
| Entrez ID: | 8028 |
| Nearest Unigene: | Hs.30385 |
| Nearest Refseq: | NM_004641 |
| Nearest Ensembl: | ENSG00000078403 |
| Gene Name: | "myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10" |
| Gene Alias: | AF10 |
| Gene Description: | "myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10" |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.751244 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
