Difference between revisions of "TSS:Hg 104235.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=90 |entrez_id=100532731 |gc_percent=0.646766 |gene_alias=- |gene_description=COMMD3-BMI1 readthrough |gene_name=COMMD3-BMI1 |ge...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000417470.1:-16 uc057sfb.1:-16 ENST00000448361.5:-23 uc057sfa.1:-23 ENST00000463688.6:-27 uc057sez.1:-27 ENST00000463409.6:-36 uc057sey.1:-36 ENST00000489125.2:-37 uc057sex.1:-37 ENST00000496071.5:-39 uc057sew.1:-39 ENST00000472610.5:-40 uc057sev.1:-40 ENST00000444869.5:-48 uc057seu.1:-48 AY542159:-50 ENST00000456711.5:-51 uc057set.1:-51 ENST00000470045.1:-53 uc057ses.1:-53 AK295109:-53 KJ893368:-54 ENST00000479958.6:-59 ENST00000602390.5:-59 uc057ser.1:-59 uc009xkg.4:-59 AF078848:-59 AK128789:-59 AK313235:-59 ENST00000468179.6:-69 uc057seq.1:-69 BC022898:-72 AF201948:-79 ENST00000475460.6:-80 uc057sep.1:-80 ENST00000602574.5:-82 uc057seo.1:-82 BX647275:-82 NM_012071:-85 NM_001204062:-85 ENST00000468469.5:256 uc057sfc.1:256 ENST00000376836.7:-494 uc001irf.4:-494 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=-16 | ||
|distance_to_tss=90 | |distance_to_tss=90 | ||
| + | |end=22316479 | ||
|entrez_id=100532731 | |entrez_id=100532731 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=COMMD3-BMI1 readthrough | |gene_description=COMMD3-BMI1 readthrough | ||
| − | |gene_name=COMMD3-BMI1 | + | |gene_id=100532731 |
| + | |gene_name=COMMD3-BMI1 readthrough | ||
| + | |gene_source=HGNC:48326 | ||
| + | |gene_symbol=COMMD3-BMI1 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:48326 | ||
|nearest_ensembl=ENSG00000269897 | |nearest_ensembl=ENSG00000269897 | ||
|nearest_promoter_id=NM_001204062 | |nearest_promoter_id=NM_001204062 | ||
|nearest_refseq=NM_001204062 | |nearest_refseq=NM_001204062 | ||
|nearest_unigene=Hs.380403 | |nearest_unigene=Hs.380403 | ||
| + | |num_trans=45 | ||
| + | |species=human | ||
| + | |start=22316467 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000417470.1 uc057sfb.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104235.1 | |tss_id=hg_104235.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5T8Z1 | ||
}} | }} | ||
Revision as of 20:43, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000417470.1 uc057sfb.1 |
|---|---|
| Distance: | -16 |
| Num_trans: | 45 |
| All_trans: | ENST00000417470.1:-16 uc057sfb.1:-16 ENST00000448361.5:-23 uc057sfa.1:-23 ENST00000463688.6:-27 uc057sez.1:-27 ENST00000463409.6:-36 uc057sey.1:-36 ENST00000489125.2:-37 uc057sex.1:-37 ENST00000496071.5:-39 uc057sew.1:-39 ENST00000472610.5:-40 uc057sev.1:-40 ENST00000444869.5:-48 uc057seu.1:-48 AY542159:-50 ENST00000456711.5:-51 uc057set.1:-51 ENST00000470045.1:-53 uc057ses.1:-53 AK295109:-53 KJ893368:-54 ENST00000479958.6:-59 ENST00000602390.5:-59 uc057ser.1:-59 uc009xkg.4:-59 AF078848:-59 AK128789:-59 AK313235:-59 ENST00000468179.6:-69 uc057seq.1:-69 BC022898:-72 AF201948:-79 ENST00000475460.6:-80 uc057sep.1:-80 ENST00000602574.5:-82 uc057seo.1:-82 BX647275:-82 NM_012071:-85 NM_001204062:-85 ENST00000468469.5:256 uc057sfc.1:256 ENST00000376836.7:-494 uc001irf.4:-494 |
TATA-Box annotation
| Distance to TSS: | 90 |
|---|---|
| Nearest PromoterID: | NM_001204062 |
| Entrez ID: | 100532731 |
| Nearest Unigene: | Hs.380403 |
| Nearest Refseq: | NM_001204062 |
| Nearest Ensembl: | ENSG00000269897 |
| Gene Name: | COMMD3-BMI1 readthrough |
| Gene Alias: | - |
| Gene Description: | COMMD3-BMI1 readthrough |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
