Difference between revisions of "TSS:Hg 10425.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=1195 |entrez_id=7799 |gc_percent=0.328358 |gene_alias=HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 |gene_description=PR/SET domain 2...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |KMT8= | ||
| + | |KMT8A= | ||
| + | |MTB-ZF= | ||
| + | |RIZ= | ||
| + | |RIZ1= | ||
| + | |RIZ2= | ||
| + | |chr=chr1 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| + | |distance= | ||
|distance_to_tss=1195 | |distance_to_tss=1195 | ||
| + | |end=13701438 | ||
|entrez_id=7799 | |entrez_id=7799 | ||
|gc_percent=0.328358 | |gc_percent=0.328358 | ||
| Line 12: | Line 21: | ||
|nearest_refseq=NM_012231 | |nearest_refseq=NM_012231 | ||
|nearest_unigene=Hs.371823 | |nearest_unigene=Hs.371823 | ||
| + | |num_trans=0 | ||
| + | |species=human | ||
| + | |start=13701431 | ||
| + | |strand=- | ||
|tata_box="-33(TTTTTTAAAAGG,-,0.00),-32(TTTTTAAAAGGC,+,0.00)" | |tata_box="-33(TTTTTTAAAAGG,-,0.00),-32(TTTTTAAAAGGC,+,0.00)" | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_10425.1 | |tss_id=hg_10425.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Revision as of 20:44, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 1195 |
|---|---|
| Nearest PromoterID: | NM_001135610 |
| Entrez ID: | 7799 |
| Nearest Unigene: | Hs.371823 |
| Nearest Refseq: | NM_012231 |
| Nearest Ensembl: | ENSG00000116731 |
| Gene Name: | PRDM2 |
| Gene Alias: | HUMHOXY1 |
| Gene Description: | PR/SET domain 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.328358 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-33(TTTTTTAAAAGG,-,0.00),-32(TTTTTAAAAGGC,+,0.00)" |
