Difference between revisions of "TSS:Hg 104320.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=30722 |entrez_id=56243 |gc_percent=0.38806 |gene_alias=SKT |gene_description=KIAA1217 |gene_name=KIAA1217 |gene_type=protein-cod...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000438429.5:-316 uc001irv.2:-316 AK096446:-316 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| + | |distance=-316 | ||
|distance_to_tss=30722 | |distance_to_tss=30722 | ||
| + | |end=24239516 | ||
|entrez_id=56243 | |entrez_id=56243 | ||
|gc_percent=0.38806 | |gc_percent=0.38806 | ||
|gene_alias=SKT | |gene_alias=SKT | ||
|gene_description=KIAA1217 | |gene_description=KIAA1217 | ||
| + | |gene_id=56243 | ||
|gene_name=KIAA1217 | |gene_name=KIAA1217 | ||
| + | |gene_source=HGNC:25428 | ||
| + | |gene_symbol=KIAA1217 | ||
| + | |gene_synonyms=DKFZP761L0424 SKT | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:25428 | ||
|nearest_ensembl=ENSG00000120549 | |nearest_ensembl=ENSG00000120549 | ||
|nearest_promoter_id=NM_001282768 | |nearest_promoter_id=NM_001282768 | ||
|nearest_refseq=NM_019590 | |nearest_refseq=NM_019590 | ||
|nearest_unigene=Hs.445885 | |nearest_unigene=Hs.445885 | ||
| + | |num_trans=3 | ||
| + | |species=human | ||
| + | |start=24239510 | ||
| + | |strand=+ | ||
|tata_box="-31(CTGTTTTTAAGG,-,0.00),-29(GTTTTTAAGGGC,+,0.00),79(TGCTATAAAAGT,-,0.00)" | |tata_box="-31(CTGTTTTTAAGG,-,0.00),-29(GTTTTTAAGGGC,+,0.00),79(TGCTATAAAAGT,-,0.00)" | ||
| + | |transcript_name=ENST00000438429.5 uc001irv.2 AK096446 | ||
| + | |tss_classification=no | ||
|tss_id=hg_104320.1 | |tss_id=hg_104320.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5T5P0 | ||
}} | }} | ||
Revision as of 20:47, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000438429.5 uc001irv.2 AK096446 |
|---|---|
| Distance: | -316 |
| Num_trans: | 3 |
| All_trans: | ENST00000438429.5:-316 uc001irv.2:-316 AK096446:-316 |
TATA-Box annotation
| Distance to TSS: | 30722 |
|---|---|
| Nearest PromoterID: | NM_001282768 |
| Entrez ID: | 56243 |
| Nearest Unigene: | Hs.445885 |
| Nearest Refseq: | NM_019590 |
| Nearest Ensembl: | ENSG00000120549 |
| Gene Name: | KIAA1217 |
| Gene Alias: | SKT |
| Gene Description: | KIAA1217 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.38806 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-31(CTGTTTTTAAGG,-,0.00),-29(GTTTTTAAGGGC,+,0.00),79(TGCTATAAAAGT,-,0.00)" |
