Difference between revisions of "TSS:Hg 104380.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=38 |entrez_id=101929052 |gc_percent=0.373134 |gene_alias=- |gene_description=long intergenic non-protein coding RNA 836 |gene_na...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000628907.2:0 ENST00000625325.2:0 uc057sie.1:0 uc031wad.2:0 ENST00000628620.1:4 uc031wac.2:4 ENST00000626230.2:-18 NR_108069:-18 NR_108067:-18 NR_108068:-18 uc001isl.1:-18 AK123440:-18 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=0 | ||
|distance_to_tss=38 | |distance_to_tss=38 | ||
| + | |end=25651771 | ||
|entrez_id=101929052 | |entrez_id=101929052 | ||
|gc_percent=0.373134 | |gc_percent=0.373134 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=long intergenic non-protein coding RNA 836 | |gene_description=long intergenic non-protein coding RNA 836 | ||
| − | |gene_name=LINC00836 | + | |gene_id=101929052 |
| + | |gene_name=long intergenic non-protein coding RNA 836 | ||
| + | |gene_source=HGNC:44915 | ||
| + | |gene_symbol=LINC00836 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:44915 | ||
|nearest_ensembl=ENSG00000280809 | |nearest_ensembl=ENSG00000280809 | ||
|nearest_promoter_id=NR_108067 | |nearest_promoter_id=NR_108067 | ||
|nearest_refseq=NR_108067 | |nearest_refseq=NR_108067 | ||
|nearest_unigene=Hs.128298 | |nearest_unigene=Hs.128298 | ||
| + | |num_trans=12 | ||
| + | |species=human | ||
| + | |start=25651729 | ||
| + | |strand=+ | ||
|tata_box="-26(GCTTTTATGCTG,+,0.00)" | |tata_box="-26(GCTTTTATGCTG,+,0.00)" | ||
| + | |transcript_name=ENST00000628907.2 ENST00000625325.2 uc057sie.1 uc031wad.2 | ||
| + | |tss_classification=no | ||
|tss_id=hg_104380.1 | |tss_id=hg_104380.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:49, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000628907.2 ENST00000625325.2 uc057sie.1 uc031wad.2 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | ENST00000628907.2:0 ENST00000625325.2:0 uc057sie.1:0 uc031wad.2:0 ENST00000628620.1:4 uc031wac.2:4 ENST00000626230.2:-18 NR_108069:-18 NR_108067:-18 NR_108068:-18 uc001isl.1:-18 AK123440:-18 |
TATA-Box annotation
| Distance to TSS: | 38 |
|---|---|
| Nearest PromoterID: | NR_108067 |
| Entrez ID: | 101929052 |
| Nearest Unigene: | Hs.128298 |
| Nearest Refseq: | NR_108067 |
| Nearest Ensembl: | ENSG00000280809 |
| Gene Name: | long intergenic non-protein coding RNA 836 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 836 |
| Gene Type: | ncRNA |
| CpG%: | 0.01 |
| GC%: | 0.373134 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-26(GCTTTTATGCTG,+,0.00)" |
