Difference between revisions of "TSS:Hg 104393.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.135 |distance_to_tss=412 |entrez_id=2572 |gc_percent=0.716418 |gene_alias=GAD65 |gene_description=glutamate decarboxylase 2 |gene_name=GAD2 |gene_ty...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000428517.2:9 uc009xkr.5:9 BC029517:9 M81882:34 ENST00000259271.7:-49 uc001isq.3:-49 M74826:-49 BC126327:61 BC126329:61 AB527954:86 HQ258311:86 X69936:101 BC039038:-208 BC047899:-230 ENST00000376261.7:-407 NM_001134366:-407 NM_000818:-407 uc001isp.3:-407 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| + | |distance=9 | ||
|distance_to_tss=412 | |distance_to_tss=412 | ||
| + | |end=26216724 | ||
|entrez_id=2572 | |entrez_id=2572 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
|gene_alias=GAD65 | |gene_alias=GAD65 | ||
|gene_description=glutamate decarboxylase 2 | |gene_description=glutamate decarboxylase 2 | ||
| − | |gene_name=GAD2 | + | |gene_id=2572 |
| + | |gene_name=glutamate decarboxylase 2 | ||
| + | |gene_source=HGNC:4093 | ||
| + | |gene_symbol=GAD2 | ||
| + | |gene_synonyms=GAD65 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:4093 | ||
|nearest_ensembl=ENSG00000136750 | |nearest_ensembl=ENSG00000136750 | ||
|nearest_promoter_id=NM_001134366 | |nearest_promoter_id=NM_001134366 | ||
|nearest_refseq=NM_000818 | |nearest_refseq=NM_000818 | ||
|nearest_unigene=Hs.231829 | |nearest_unigene=Hs.231829 | ||
| + | |num_trans=18 | ||
| + | |species=human | ||
| + | |start=26216713 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000428517.2 uc009xkr.5 BC029517 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104393.1 | |tss_id=hg_104393.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q4G154 Q5VZ31 | ||
}} | }} | ||
Revision as of 20:50, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000428517.2 uc009xkr.5 BC029517 |
|---|---|
| Distance: | 9 |
| Num_trans: | 18 |
| All_trans: | ENST00000428517.2:9 uc009xkr.5:9 BC029517:9 M81882:34 ENST00000259271.7:-49 uc001isq.3:-49 M74826:-49 BC126327:61 BC126329:61 AB527954:86 HQ258311:86 X69936:101 BC039038:-208 BC047899:-230 ENST00000376261.7:-407 NM_001134366:-407 NM_000818:-407 uc001isp.3:-407 |
TATA-Box annotation
| Distance to TSS: | 412 |
|---|---|
| Nearest PromoterID: | NM_001134366 |
| Entrez ID: | 2572 |
| Nearest Unigene: | Hs.231829 |
| Nearest Refseq: | NM_000818 |
| Nearest Ensembl: | ENSG00000136750 |
| Gene Name: | glutamate decarboxylase 2 |
| Gene Alias: | GAD65 |
| Gene Description: | glutamate decarboxylase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
