Difference between revisions of "TSS:Hg 104509.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=39 |entrez_id=101929218 |gc_percent=0.552239 |gene_alias=- |gene_description=long intergenic non-protein coding RNA 1517 |gene_...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=NR_120652:-32 AK058127:38 ENST00000456082.1:48 uc057sma.1:48 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=-32 | ||
|distance_to_tss=39 | |distance_to_tss=39 | ||
| + | |end=28743697 | ||
|entrez_id=101929218 | |entrez_id=101929218 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=long intergenic non-protein coding RNA 1517 | |gene_description=long intergenic non-protein coding RNA 1517 | ||
| − | |gene_name=LINC01517 | + | |gene_id=101929218 |
| + | |gene_name=long intergenic non-protein coding RNA 1517 | ||
| + | |gene_source=HGNC:51212 | ||
| + | |gene_symbol=LINC01517 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:51212 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_120652 | |nearest_promoter_id=NR_120652 | ||
|nearest_refseq=NR_120652 | |nearest_refseq=NR_120652 | ||
|nearest_unigene=Hs.224866 | |nearest_unigene=Hs.224866 | ||
| + | |num_trans=4 | ||
| + | |species=human | ||
| + | |start=28743681 | ||
| + | |strand=+ | ||
|tata_box="13(CCCTCTTAGAGG,-,0.00),14(CCTCTTAGAGGT,+,0.00)" | |tata_box="13(CCCTCTTAGAGG,-,0.00),14(CCTCTTAGAGGT,+,0.00)" | ||
| + | |transcript_name=NR_120652 | ||
| + | |tss_classification=no | ||
|tss_id=hg_104509.1 | |tss_id=hg_104509.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:55, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NR_120652 |
|---|---|
| Distance: | -32 |
| Num_trans: | 4 |
| All_trans: | NR_120652:-32 AK058127:38 ENST00000456082.1:48 uc057sma.1:48 |
TATA-Box annotation
| Distance to TSS: | 39 |
|---|---|
| Nearest PromoterID: | NR_120652 |
| Entrez ID: | 101929218 |
| Nearest Unigene: | Hs.224866 |
| Nearest Refseq: | NR_120652 |
| Nearest Ensembl: | |
| Gene Name: | long intergenic non-protein coding RNA 1517 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 1517 |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "13(CCCTCTTAGAGG,-,0.00),14(CCTCTTAGAGGT,+,0.00)" |
