Difference between revisions of "TSS:Hg 104628.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.09 |distance_to_tss=138 |entrez_id=79741 |gc_percent=0.636816 |gene_alias=BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 |gene_description=coiled-coil domai...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |BioT2-A= | ||
| + | |BioT2-B= | ||
| + | |BioT2-C= | ||
| + | |C10orf68= | ||
| + | |all_trans=BC022020:-20 BC042672:-39 ENST00000476558.5:-56 ENST00000277657.10:-56 ENST00000362006.9:-56 uc057spu.1:-56 uc001iwk.5:-56 uc001iwj.5:-56 AK057324:-56 NR_109827:-114 NR_109826:-114 NM_145023:-114 NM_001026383:-114 ENST00000545067.5:143 uc057spv.1:143 BX647771:143 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| + | |distance=-20 | ||
|distance_to_tss=138 | |distance_to_tss=138 | ||
| + | |end=32446244 | ||
|entrez_id=79741 | |entrez_id=79741 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
|gene_alias=BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 | |gene_alias=BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 | ||
|gene_description=coiled-coil domain containing 7 | |gene_description=coiled-coil domain containing 7 | ||
| − | |gene_name=CCDC7 | + | |gene_id=79741 |
| + | |gene_name=coiled-coil domain containing 7 | ||
| + | |gene_source=HGNC:26533 | ||
| + | |gene_symbol=CCDC7 | ||
| + | |gene_synonyms=BIOT2 FLJ13031 FLJ32762 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:26533 | ||
|nearest_ensembl=ENSG00000150076 | |nearest_ensembl=ENSG00000150076 | ||
|nearest_promoter_id=NR_109826 | |nearest_promoter_id=NR_109826 | ||
|nearest_refseq=NM_024688 | |nearest_refseq=NM_024688 | ||
|nearest_unigene=Hs.585464 | |nearest_unigene=Hs.585464 | ||
| + | |num_trans=16 | ||
| + | |species=human | ||
| + | |start=32446195 | ||
| + | |strand=+ | ||
| + | |transcript_name=BC022020 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104628.1 | |tss_id=hg_104628.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:00, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC022020 |
|---|---|
| Distance: | -20 |
| Num_trans: | 16 |
| All_trans: | BC022020:-20 BC042672:-39 ENST00000476558.5:-56 ENST00000277657.10:-56 ENST00000362006.9:-56 uc057spu.1:-56 uc001iwk.5:-56 uc001iwj.5:-56 AK057324:-56 NR_109827:-114 NR_109826:-114 NM_145023:-114 NM_001026383:-114 ENST00000545067.5:143 uc057spv.1:143 BX647771:143 |
TATA-Box annotation
| Distance to TSS: | 138 |
|---|---|
| Nearest PromoterID: | NR_109826 |
| Entrez ID: | 79741 |
| Nearest Unigene: | Hs.585464 |
| Nearest Refseq: | NM_024688 |
| Nearest Ensembl: | ENSG00000150076 |
| Gene Name: | coiled-coil domain containing 7 |
| Gene Alias: | BIOT2 |
| Gene Description: | coiled-coil domain containing 7 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
