Difference between revisions of "TSS:Hg 104737.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.06 |distance_to_tss=243 |entrez_id=84856 |gc_percent=0.661692 |gene_alias=- |gene_description=long intergenic non-protein coding RNA 839 |gene_name=...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000424751.2:-99 uc001izz.3:-99 AK090789:-99 ENST00000429940.6:-184 uc001izy.4:-184 AK092104:-184 BC007394:-189 NR_026827:-236 AK293138:-236 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| + | |distance=-99 | ||
|distance_to_tss=243 | |distance_to_tss=243 | ||
| + | |end=42475742 | ||
|entrez_id=84856 | |entrez_id=84856 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=long intergenic non-protein coding RNA 839 | |gene_description=long intergenic non-protein coding RNA 839 | ||
| − | |gene_name=LINC00839 | + | |gene_id=84856 |
| + | |gene_name=long intergenic non-protein coding RNA 839 | ||
| + | |gene_source=HGNC:28269 | ||
| + | |gene_symbol=LINC00839 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:28269 | ||
|nearest_ensembl=ENSG00000185904 | |nearest_ensembl=ENSG00000185904 | ||
|nearest_promoter_id=NR_026827 | |nearest_promoter_id=NR_026827 | ||
|nearest_refseq=NM_032770 | |nearest_refseq=NM_032770 | ||
|nearest_unigene=Hs.55977 | |nearest_unigene=Hs.55977 | ||
| + | |num_trans=9 | ||
| + | |species=human | ||
| + | |start=42475726 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000424751.2 uc001izz.3 AK090789 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104737.1 | |tss_id=hg_104737.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:05, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000424751.2 uc001izz.3 AK090789 |
|---|---|
| Distance: | -99 |
| Num_trans: | 9 |
| All_trans: | ENST00000424751.2:-99 uc001izz.3:-99 AK090789:-99 ENST00000429940.6:-184 uc001izy.4:-184 AK092104:-184 BC007394:-189 NR_026827:-236 AK293138:-236 |
TATA-Box annotation
| Distance to TSS: | 243 |
|---|---|
| Nearest PromoterID: | NR_026827 |
| Entrez ID: | 84856 |
| Nearest Unigene: | Hs.55977 |
| Nearest Refseq: | NM_032770 |
| Nearest Ensembl: | ENSG00000185904 |
| Gene Name: | long intergenic non-protein coding RNA 839 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 839 |
| Gene Type: | ncRNA |
| CpG%: | 0.06 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
