Difference between revisions of "TSS:Hg 104748.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.18 |distance_to_tss=85 |entrez_id=55454 |gc_percent=0.830846 |gene_alias=CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT |gene_description=chon...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |ChGn-2= | ||
| + | |GALNACT-2= | ||
| + | |GALNACT2= | ||
| + | |PRO0082= | ||
| + | |all_trans=AK125300:0 AB079252:-1 AF086458:9 BX640967:-17 ENST00000374466.3:-37 uc001jan.5:-37 AB090811:-37 BC030268:-37 NM_018590:-78 NR_135077:-78 | ||
| + | |beta4GalNAcT= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.18 | |cpg_percent=0.18 | ||
| + | |distance=0 | ||
|distance_to_tss=85 | |distance_to_tss=85 | ||
| + | |end=43138538 | ||
|entrez_id=55454 | |entrez_id=55454 | ||
|gc_percent=0.830846 | |gc_percent=0.830846 | ||
|gene_alias=CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT | |gene_alias=CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT | ||
|gene_description=chondroitin sulfate N-acetylgalactosaminyltransferase 2 | |gene_description=chondroitin sulfate N-acetylgalactosaminyltransferase 2 | ||
| − | |gene_name=CSGALNACT2 | + | |gene_id=55454 |
| + | |gene_name=chondroitin sulfate N-acetylgalactosaminyltransferase 2 | ||
| + | |gene_source=HGNC:24292 | ||
| + | |gene_symbol=CSGALNACT2 | ||
| + | |gene_synonyms=GALNACT-2 GALNACT2 MGC40204 PRO0082 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:24292 | ||
|nearest_ensembl=ENSG00000169826 | |nearest_ensembl=ENSG00000169826 | ||
|nearest_promoter_id=NM_018590 | |nearest_promoter_id=NM_018590 | ||
|nearest_refseq=NM_018590 | |nearest_refseq=NM_018590 | ||
|nearest_unigene=Hs.657569 | |nearest_unigene=Hs.657569 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=43138522 | ||
| + | |strand=+ | ||
| + | |transcript_name=AK125300 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104748.1 | |tss_id=hg_104748.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:05, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK125300 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10 |
| All_trans: | AK125300:0 AB079252:-1 AF086458:9 BX640967:-17 ENST00000374466.3:-37 uc001jan.5:-37 AB090811:-37 BC030268:-37 NM_018590:-78 NR_135077:-78 |
TATA-Box annotation
| Distance to TSS: | 85 |
|---|---|
| Nearest PromoterID: | NM_018590 |
| Entrez ID: | 55454 |
| Nearest Unigene: | Hs.657569 |
| Nearest Refseq: | NM_018590 |
| Nearest Ensembl: | ENSG00000169826 |
| Gene Name: | chondroitin sulfate N-acetylgalactosaminyltransferase 2 |
| Gene Alias: | CHGN2 |
| Gene Description: | chondroitin sulfate N-acetylgalactosaminyltransferase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.18 |
| GC%: | 0.830846 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
