Difference between revisions of "TSS:Hg 104787.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.125 |distance_to_tss=17 |entrez_id=240 |gc_percent=0.80597 |gene_alias=5-LO|5-LOX|5LPG|LOG5 |gene_description=arachidonate 5-lipoxygenase |gene_name...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |5-LOX= | ||
| + | |5LPG= | ||
| + | |LOG5= | ||
| + | |all_trans=ENST00000542434.5:0 NM_001256154:0 NM_001256153:0 NM_000698:0 uc010qfg.3:0 AB208946:0 AK225603:14 BC130332:14 BC132677:14 BC143985:14 BC143986:14 AK315223:17 ENST00000374391.6:28 uc001jce.5:28 BC034464:28 BC040450:38 J03600:39 J03571:50 AB590536:77 HQ258335:79 KJ890662:79 KR711721:79 ENST00000612635.4:81 uc057syn.1:81 JQ728550:81 HM592258:81 HM592259:81 HM592260:81 HM592261:81 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| + | |distance=0 | ||
|distance_to_tss=17 | |distance_to_tss=17 | ||
| + | |end=45374199 | ||
|entrez_id=240 | |entrez_id=240 | ||
|gc_percent=0.80597 | |gc_percent=0.80597 | ||
|gene_alias=5-LO|5-LOX|5LPG|LOG5 | |gene_alias=5-LO|5-LOX|5LPG|LOG5 | ||
|gene_description=arachidonate 5-lipoxygenase | |gene_description=arachidonate 5-lipoxygenase | ||
| − | |gene_name=ALOX5 | + | |gene_id=240 |
| + | |gene_name=arachidonate 5-lipoxygenase | ||
| + | |gene_source=HGNC:435 | ||
| + | |gene_symbol=ALOX5 | ||
| + | |gene_synonyms=5-LOX | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:435 | ||
|nearest_ensembl=ENSG00000012779 | |nearest_ensembl=ENSG00000012779 | ||
|nearest_promoter_id=NM_001320862 | |nearest_promoter_id=NM_001320862 | ||
|nearest_refseq=NM_000698 | |nearest_refseq=NM_000698 | ||
|nearest_unigene=Hs.89499 | |nearest_unigene=Hs.89499 | ||
| + | |num_trans=29 | ||
| + | |species=human | ||
| + | |start=45374167 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000542434.5 NM_001256154 NM_001256153 NM_000698 uc010qfg.3 AB208946 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104787.1 | |tss_id=hg_104787.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=P09917 Q59H13 | ||
}} | }} | ||
Revision as of 21:07, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000542434.5 NM_001256154 NM_001256153 NM_000698 uc010qfg.3 AB208946 |
|---|---|
| Distance: | 0 |
| Num_trans: | 29 |
| All_trans: | ENST00000542434.5:0 NM_001256154:0 NM_001256153:0 NM_000698:0 uc010qfg.3:0 AB208946:0 AK225603:14 BC130332:14 BC132677:14 BC143985:14 BC143986:14 AK315223:17 ENST00000374391.6:28 uc001jce.5:28 BC034464:28 BC040450:38 J03600:39 J03571:50 AB590536:77 HQ258335:79 KJ890662:79 KR711721:79 ENST00000612635.4:81 uc057syn.1:81 JQ728550:81 HM592258:81 HM592259:81 HM592260:81 HM592261:81 |
TATA-Box annotation
| Distance to TSS: | 17 |
|---|---|
| Nearest PromoterID: | NM_001320862 |
| Entrez ID: | 240 |
| Nearest Unigene: | Hs.89499 |
| Nearest Refseq: | NM_000698 |
| Nearest Ensembl: | ENSG00000012779 |
| Gene Name: | arachidonate 5-lipoxygenase |
| Gene Alias: | 5-LO |
| Gene Description: | arachidonate 5-lipoxygenase |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.80597 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
