Difference between revisions of "TSS:Hg 104790.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=203 |entrez_id=240 |gc_percent=0.696517 |gene_alias=5-LO|5-LOX|5LPG|LOG5 |gene_description=arachidonate 5-lipoxygenase |gene_na...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |5-LOX= | ||
| + | |5LPG= | ||
| + | |LOG5= | ||
| + | |all_trans=ENST00000612635.4:-84 uc057syn.1:-84 JQ728550:-84 HM592258:-84 HM592259:-84 HM592260:-84 HM592261:-84 HQ258335:-86 KJ890662:-86 KR711721:-86 AB590536:-88 J03571:-115 J03600:-126 BC040450:-127 ENST00000374391.6:-137 uc001jce.5:-137 BC034464:-137 AK315223:-148 AK225603:-151 BC130332:-151 BC132677:-151 BC143985:-151 BC143986:-151 AB208946:-183 ENST00000542434.5:-188 NM_001256154:-188 NM_001256153:-188 NM_000698:-188 uc010qfg.3:-188 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=-84 | ||
|distance_to_tss=203 | |distance_to_tss=203 | ||
| + | |end=45374374 | ||
|entrez_id=240 | |entrez_id=240 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
|gene_alias=5-LO|5-LOX|5LPG|LOG5 | |gene_alias=5-LO|5-LOX|5LPG|LOG5 | ||
|gene_description=arachidonate 5-lipoxygenase | |gene_description=arachidonate 5-lipoxygenase | ||
| − | |gene_name=ALOX5 | + | |gene_id=240 |
| + | |gene_name=arachidonate 5-lipoxygenase | ||
| + | |gene_source=HGNC:435 | ||
| + | |gene_symbol=ALOX5 | ||
| + | |gene_synonyms=5-LOX | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:435 | ||
|nearest_ensembl=ENSG00000012779 | |nearest_ensembl=ENSG00000012779 | ||
|nearest_promoter_id=NM_001320862 | |nearest_promoter_id=NM_001320862 | ||
|nearest_refseq=NM_000698 | |nearest_refseq=NM_000698 | ||
|nearest_unigene=Hs.89499 | |nearest_unigene=Hs.89499 | ||
| + | |num_trans=29 | ||
| + | |species=human | ||
| + | |start=45374363 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000612635.4 uc057syn.1 JQ728550 HM592258 HM592259 HM592260 HM592261 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104790.1 | |tss_id=hg_104790.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A087X109 I0CLG0 | ||
}} | }} | ||
Revision as of 21:07, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000612635.4 uc057syn.1 JQ728550 HM592258 HM592259 HM592260 HM592261 |
|---|---|
| Distance: | -84 |
| Num_trans: | 29 |
| All_trans: | ENST00000612635.4:-84 uc057syn.1:-84 JQ728550:-84 HM592258:-84 HM592259:-84 HM592260:-84 HM592261:-84 HQ258335:-86 KJ890662:-86 KR711721:-86 AB590536:-88 J03571:-115 J03600:-126 BC040450:-127 ENST00000374391.6:-137 uc001jce.5:-137 BC034464:-137 AK315223:-148 AK225603:-151 BC130332:-151 BC132677:-151 BC143985:-151 BC143986:-151 AB208946:-183 ENST00000542434.5:-188 NM_001256154:-188 NM_001256153:-188 NM_000698:-188 uc010qfg.3:-188 |
TATA-Box annotation
| Distance to TSS: | 203 |
|---|---|
| Nearest PromoterID: | NM_001320862 |
| Entrez ID: | 240 |
| Nearest Unigene: | Hs.89499 |
| Nearest Refseq: | NM_000698 |
| Nearest Ensembl: | ENSG00000012779 |
| Gene Name: | arachidonate 5-lipoxygenase |
| Gene Alias: | 5-LO |
| Gene Description: | arachidonate 5-lipoxygenase |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
