Difference between revisions of "TSS:Hg 104802.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=-16970 |entrez_id=4477 |gc_percent=0.447761 |gene_alias=HPC13|IGBF|MSP|MSPB|PN44|PRPS|PSP|PSP-94|PSP57|PSP94 |gene_description=m...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |IGBF= | ||
| + | |MSP= | ||
| + | |MSPB= | ||
| + | |PN44= | ||
| + | |PRPS= | ||
| + | |PSP= | ||
| + | |PSP-94= | ||
| + | |PSP57= | ||
| + | |PSP94= | ||
| + | |all_trans=ENST00000623642.2:5 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=5 | ||
|distance_to_tss=-16970 | |distance_to_tss=-16970 | ||
| + | |end=46063245 | ||
|entrez_id=4477 | |entrez_id=4477 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
|gene_alias=HPC13|IGBF|MSP|MSPB|PN44|PRPS|PSP|PSP-94|PSP57|PSP94 | |gene_alias=HPC13|IGBF|MSP|MSPB|PN44|PRPS|PSP|PSP-94|PSP57|PSP94 | ||
|gene_description=microseminoprotein beta | |gene_description=microseminoprotein beta | ||
| − | |gene_name= | + | |gene_id= |
| + | |gene_name=ribosomal protein L23a pseudogene 61 | ||
| + | |gene_source=HGNC:36016 | ||
| + | |gene_symbol=RPL23AP61 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:36016 | ||
|nearest_ensembl=ENSG00000263639 | |nearest_ensembl=ENSG00000263639 | ||
|nearest_promoter_id=NM_138634 | |nearest_promoter_id=NM_138634 | ||
|nearest_refseq=NM_002443 | |nearest_refseq=NM_002443 | ||
|nearest_unigene=Hs.255462 | |nearest_unigene=Hs.255462 | ||
| + | |num_trans=1 | ||
| + | |species=human | ||
| + | |start=46063232 | ||
| + | |strand=+ | ||
|tata_box="70(GGATTTAAAGGC,-,0.00)" | |tata_box="70(GGATTTAAAGGC,-,0.00)" | ||
| + | |transcript_name=ENST00000623642.2 | ||
| + | |tss_classification=no | ||
|tss_id=hg_104802.1 | |tss_id=hg_104802.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:08, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000623642.2 |
|---|---|
| Distance: | 5 |
| Num_trans: | 1 |
| All_trans: | ENST00000623642.2:5 |
TATA-Box annotation
| Distance to TSS: | -16970 |
|---|---|
| Nearest PromoterID: | NM_138634 |
| Entrez ID: | 4477 |
| Nearest Unigene: | Hs.255462 |
| Nearest Refseq: | NM_002443 |
| Nearest Ensembl: | ENSG00000263639 |
| Gene Name: | ribosomal protein L23a pseudogene 61 |
| Gene Alias: | HPC13 |
| Gene Description: | microseminoprotein beta |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "70(GGATTTAAAGGC,-,0.00)" |
