Difference between revisions of "TSS:Hg 104816.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.12 |distance_to_tss=33 |entrez_id=83849 |gc_percent=0.791045 |gene_alias=CHR10SYT|sytXV |gene_description=synaptotagmin 15 |gene_name=SYT15 |gene_ty...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=NM_181519:-29 NM_031912:-29 ENST00000512997.5:31 uc057tal.1:31 ENST00000374321.8:49 uc001jea.4:49 ENST00000503753.5:80 uc057tam.1:80 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| + | |distance=-29 | ||
|distance_to_tss=33 | |distance_to_tss=33 | ||
| + | |end=46579053 | ||
|entrez_id=83849 | |entrez_id=83849 | ||
|gc_percent=0.791045 | |gc_percent=0.791045 | ||
|gene_alias=CHR10SYT|sytXV | |gene_alias=CHR10SYT|sytXV | ||
|gene_description=synaptotagmin 15 | |gene_description=synaptotagmin 15 | ||
| − | |gene_name=SYT15 | + | |gene_id=83849 |
| + | |gene_name=synaptotagmin 15 | ||
| + | |gene_source=EntrezGene:83849 | ||
| + | |gene_symbol=SYT15 | ||
| + | |gene_synonyms=CHR10SYT sytXV | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id= | ||
|nearest_ensembl=ENSG00000204176 | |nearest_ensembl=ENSG00000204176 | ||
|nearest_promoter_id=NM_181519 | |nearest_promoter_id=NM_181519 | ||
|nearest_refseq=NM_031912 | |nearest_refseq=NM_031912 | ||
|nearest_unigene=Hs.696346 | |nearest_unigene=Hs.696346 | ||
| + | |num_trans=8 | ||
| + | |species=human | ||
| + | |start=46579044 | ||
| + | |strand=+ | ||
| + | |sytXV= | ||
|tata_box="47(CGCTTTAAGAGA,-,0.00),48(GCTTTAAGAGAC,+,0.00)" | |tata_box="47(CGCTTTAAGAGA,-,0.00),48(GCTTTAAGAGAC,+,0.00)" | ||
| + | |transcript_name=NM_181519 NM_031912 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104816.1 | |tss_id=hg_104816.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q9BQS2 | ||
}} | }} | ||
Revision as of 21:08, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_181519 NM_031912 |
|---|---|
| Distance: | -29 |
| Num_trans: | 8 |
| All_trans: | NM_181519:-29 NM_031912:-29 ENST00000512997.5:31 uc057tal.1:31 ENST00000374321.8:49 uc001jea.4:49 ENST00000503753.5:80 uc057tam.1:80 |
TATA-Box annotation
| Distance to TSS: | 33 |
|---|---|
| Nearest PromoterID: | NM_181519 |
| Entrez ID: | 83849 |
| Nearest Unigene: | Hs.696346 |
| Nearest Refseq: | NM_031912 |
| Nearest Ensembl: | ENSG00000204176 |
| Gene Name: | synaptotagmin 15 |
| Gene Alias: | CHR10SYT |
| Gene Description: | synaptotagmin 15 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.791045 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "47(CGCTTTAAGAGA,-,0.00),48(GCTTTAAGAGAC,+,0.00)" |
