Difference between revisions of "TSS:Hg 104882.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=0 |entrez_id=118461 |gc_percent=0.487562 |gene_alias=- |gene_description=chromosome 10 open reading frame 71 |gene_name=C10orf71...") |
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| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=NM_001135196:0 AK127811:0 ENST00000374144.7:46 uc021pqa.3:46 AL833265:46 ENST00000470615.1:127 uc057tek.1:127 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=0 | ||
|distance_to_tss=0 | |distance_to_tss=0 | ||
| + | |end=49299147 | ||
|entrez_id=118461 | |entrez_id=118461 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=chromosome 10 open reading frame 71 | |gene_description=chromosome 10 open reading frame 71 | ||
| − | |gene_name=C10orf71 | + | |gene_id=118461 |
| + | |gene_name=chromosome 10 open reading frame 71 | ||
| + | |gene_source=HGNC:26973 | ||
| + | |gene_symbol=C10orf71 | ||
| + | |gene_synonyms=FLJ45913 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:26973 | ||
|nearest_ensembl=ENSG00000177354 | |nearest_ensembl=ENSG00000177354 | ||
|nearest_promoter_id=NM_001135196 | |nearest_promoter_id=NM_001135196 | ||
|nearest_refseq=NM_199459 | |nearest_refseq=NM_199459 | ||
|nearest_unigene=Hs.585480 | |nearest_unigene=Hs.585480 | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=49299136 | ||
| + | |strand=+ | ||
| + | |transcript_name=NM_001135196 AK127811 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104882.1 | |tss_id=hg_104882.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B3KXR4 Q711Q0 | ||
}} | }} | ||
Revision as of 21:11, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001135196 AK127811 |
|---|---|
| Distance: | 0 |
| Num_trans: | 7 |
| All_trans: | NM_001135196:0 AK127811:0 ENST00000374144.7:46 uc021pqa.3:46 AL833265:46 ENST00000470615.1:127 uc057tek.1:127 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_001135196 |
| Entrez ID: | 118461 |
| Nearest Unigene: | Hs.585480 |
| Nearest Refseq: | NM_199459 |
| Nearest Ensembl: | ENSG00000177354 |
| Gene Name: | chromosome 10 open reading frame 71 |
| Gene Alias: | - |
| Gene Description: | chromosome 10 open reading frame 71 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
