Difference between revisions of "TSS:Hg 104893.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.13 |distance_to_tss=-54 |entrez_id=6572 |gc_percent=0.741294 |gene_alias=CMS21|VACHT |gene_description=solute carrier family 18 member A3 |gene_name...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |VACHT= | ||
| + | |all_trans=ENST00000374115.4:49 NM_003055:49 uc001jhw.3:49 U09210:49 BC007765:123 AK313094:160 CU675799:486 JF432245:486 KJ897576:486 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| + | |distance=49 | ||
|distance_to_tss=-54 | |distance_to_tss=-54 | ||
| + | |end=49610252 | ||
|entrez_id=6572 | |entrez_id=6572 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
|gene_alias=CMS21|VACHT | |gene_alias=CMS21|VACHT | ||
|gene_description=solute carrier family 18 member A3 | |gene_description=solute carrier family 18 member A3 | ||
| − | |gene_name=SLC18A3 | + | |gene_id=6572 |
| + | |gene_name=solute carrier family 18 member A3 | ||
| + | |gene_source=HGNC:10936 | ||
| + | |gene_symbol=SLC18A3 | ||
| + | |gene_synonyms=VACHT | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:10936 | ||
|nearest_ensembl=ENSG00000187714 | |nearest_ensembl=ENSG00000187714 | ||
|nearest_promoter_id=NM_003055 | |nearest_promoter_id=NM_003055 | ||
|nearest_refseq=NM_003055 | |nearest_refseq=NM_003055 | ||
|nearest_unigene=Hs.654374 | |nearest_unigene=Hs.654374 | ||
| + | |num_trans=9 | ||
| + | |species=human | ||
| + | |start=49610242 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000374115.4 NM_003055 uc001jhw.3 U09210 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104893.1 | |tss_id=hg_104893.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q16572 | ||
}} | }} | ||
Revision as of 21:12, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000374115.4 NM_003055 uc001jhw.3 U09210 |
|---|---|
| Distance: | 49 |
| Num_trans: | 9 |
| All_trans: | ENST00000374115.4:49 NM_003055:49 uc001jhw.3:49 U09210:49 BC007765:123 AK313094:160 CU675799:486 JF432245:486 KJ897576:486 |
TATA-Box annotation
| Distance to TSS: | -54 |
|---|---|
| Nearest PromoterID: | NM_003055 |
| Entrez ID: | 6572 |
| Nearest Unigene: | Hs.654374 |
| Nearest Refseq: | NM_003055 |
| Nearest Ensembl: | ENSG00000187714 |
| Gene Name: | solute carrier family 18 member A3 |
| Gene Alias: | CMS21 |
| Gene Description: | solute carrier family 18 member A3 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
