Difference between revisions of "TSS:Hg 1049.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.09 |distance_to_tss=-621 |entrez_id=126917 |gc_percent=0.701493 |gene_alias=- |gene_description=intermediate filament family orphan 2 |gene_name=IFF...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |chr=chr1 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| + | |distance= | ||
|distance_to_tss=-621 | |distance_to_tss=-621 | ||
| + | |end=18956966 | ||
|entrez_id=126917 | |entrez_id=126917 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| Line 12: | Line 15: | ||
|nearest_refseq=NM_001136265 | |nearest_refseq=NM_001136265 | ||
|nearest_unigene=Hs.466625 | |nearest_unigene=Hs.466625 | ||
| + | |num_trans=0 | ||
| + | |species=human | ||
| + | |start=18956940 | ||
| + | |strand=+ | ||
|tata_box="61(GCCTCTTAAAGG,-,0.00),62(CCTCTTAAAGGG,+,0.00),64(TCTTAAAGGGGC,+,0.00)" | |tata_box="61(GCCTCTTAAAGG,-,0.00),62(CCTCTTAAAGGG,+,0.00),64(TCTTAAAGGGGC,+,0.00)" | ||
| + | |transcript_name= | ||
| + | |tss_classification=yes | ||
|tss_id=hg_1049.1 | |tss_id=hg_1049.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Revision as of 21:12, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -621 |
|---|---|
| Nearest PromoterID: | NM_001136265 |
| Entrez ID: | 126917 |
| Nearest Unigene: | Hs.466625 |
| Nearest Refseq: | NM_001136265 |
| Nearest Ensembl: | ENSG00000169991 |
| Gene Name: | IFFO2 |
| Gene Alias: | - |
| Gene Description: | intermediate filament family orphan 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "61(GCCTCTTAAAGG,-,0.00),62(CCTCTTAAAGGG,+,0.00),64(TCTTAAAGGGGC,+,0.00)" |
