Difference between revisions of "TSS:Hg 104914.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.15 |distance_to_tss=-13 |entrez_id=104355295 |gc_percent=0.781095 |gene_alias=- |gene_description=SGMS1 antisense RNA 1 |gene_name=SGMS1-AS1 |gene_t...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000443374.6:0 NR_126411:0 uc001jjf.2:0 ENST00000609579.1:4 uc057tgr.1:4 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| + | |distance=0 | ||
|distance_to_tss=-13 | |distance_to_tss=-13 | ||
| + | |end=50624959 | ||
|entrez_id=104355295 | |entrez_id=104355295 | ||
|gc_percent=0.781095 | |gc_percent=0.781095 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=SGMS1 antisense RNA 1 | |gene_description=SGMS1 antisense RNA 1 | ||
| − | |gene_name=SGMS1-AS1 | + | |gene_id=104355295 |
| + | |gene_name=SGMS1 antisense RNA 1 | ||
| + | |gene_source=HGNC:49683 | ||
| + | |gene_symbol=SGMS1-AS1 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:49683 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_126411 | |nearest_promoter_id=NR_126411 | ||
|nearest_refseq=NR_126411 | |nearest_refseq=NR_126411 | ||
|nearest_unigene=Hs.450493 | |nearest_unigene=Hs.450493 | ||
| + | |num_trans=5 | ||
| + | |species=human | ||
| + | |start=50624916 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000443374.6 NR_126411 uc001jjf.2 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104914.1 | |tss_id=hg_104914.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:13, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000443374.6 NR_126411 uc001jjf.2 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | ENST00000443374.6:0 NR_126411:0 uc001jjf.2:0 ENST00000609579.1:4 uc057tgr.1:4 |
TATA-Box annotation
| Distance to TSS: | -13 |
|---|---|
| Nearest PromoterID: | NR_126411 |
| Entrez ID: | 104355295 |
| Nearest Unigene: | Hs.450493 |
| Nearest Refseq: | NR_126411 |
| Nearest Ensembl: | |
| Gene Name: | SGMS1 antisense RNA 1 |
| Gene Alias: | - |
| Gene Description: | SGMS1 antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.15 |
| GC%: | 0.781095 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
