Difference between revisions of "TSS:Hg 105211.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.135 |distance_to_tss=37 |entrez_id=23411 |gc_percent=0.756219 |gene_alias=SIR2|SIR2L1|SIR2alpha |gene_description=sirtuin 1 |gene_name=SIRT1 |gene_t...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SIR2L1= | ||
| + | |SIR2alpha= | ||
| + | |all_trans=AF235040:-20 ENST00000212015.10:-25 NM_012238:-25 uc001jnd.3:-25 AF083106:-25 AL136741:232 BC012499:370 ENST00000497639.5:462 ENST00000432464.5:462 NM_001142498:462 uc057tpl.1:462 uc010qis.3:462 AK289743:462 ENST00000473922.1:465 uc057tpm.1:465 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| + | |distance=-20 | ||
|distance_to_tss=37 | |distance_to_tss=37 | ||
| + | |end=67884719 | ||
|entrez_id=23411 | |entrez_id=23411 | ||
|gc_percent=0.756219 | |gc_percent=0.756219 | ||
|gene_alias=SIR2|SIR2L1|SIR2alpha | |gene_alias=SIR2|SIR2L1|SIR2alpha | ||
|gene_description=sirtuin 1 | |gene_description=sirtuin 1 | ||
| − | |gene_name=SIRT1 | + | |gene_id=23411 |
| + | |gene_name=sirtuin 1 | ||
| + | |gene_source=HGNC:14929 | ||
| + | |gene_symbol=SIRT1 | ||
| + | |gene_synonyms=SIR2L1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:14929 | ||
|nearest_ensembl=ENSG00000096717 | |nearest_ensembl=ENSG00000096717 | ||
|nearest_promoter_id=NM_012238 | |nearest_promoter_id=NM_012238 | ||
|nearest_refseq=NM_012238 | |nearest_refseq=NM_012238 | ||
|nearest_unigene=Hs.369779 | |nearest_unigene=Hs.369779 | ||
| + | |num_trans=15 | ||
| + | |species=human | ||
| + | |start=67884693 | ||
| + | |strand=+ | ||
| + | |transcript_name=AF235040 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105211.1 | |tss_id=hg_105211.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:26, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AF235040 |
|---|---|
| Distance: | -20 |
| Num_trans: | 15 |
| All_trans: | AF235040:-20 ENST00000212015.10:-25 NM_012238:-25 uc001jnd.3:-25 AF083106:-25 AL136741:232 BC012499:370 ENST00000497639.5:462 ENST00000432464.5:462 NM_001142498:462 uc057tpl.1:462 uc010qis.3:462 AK289743:462 ENST00000473922.1:465 uc057tpm.1:465 |
TATA-Box annotation
| Distance to TSS: | 37 |
|---|---|
| Nearest PromoterID: | NM_012238 |
| Entrez ID: | 23411 |
| Nearest Unigene: | Hs.369779 |
| Nearest Refseq: | NM_012238 |
| Nearest Ensembl: | ENSG00000096717 |
| Gene Name: | sirtuin 1 |
| Gene Alias: | SIR2 |
| Gene Description: | sirtuin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
