Difference between revisions of "TSS:Hg 105237.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=-4308 |entrez_id=64081 |gc_percent=0.368159 |gene_alias=HEL-S-306|MAWBP|MAWDBP |gene_description=phenazine biosynthesis like pro...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |MAWBP= | ||
| + | |MAWDBP= | ||
| + | |all_trans=AB528938:0 ENST00000491200.5:361 uc057tqm.1:361 AF132362:361 ENST00000481819.5:-410 uc057tql.1:-410 AL117395:-410 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| + | |distance=0 | ||
|distance_to_tss=-4308 | |distance_to_tss=-4308 | ||
| + | |end=68337255 | ||
|entrez_id=64081 | |entrez_id=64081 | ||
|gc_percent=0.368159 | |gc_percent=0.368159 | ||
|gene_alias=HEL-S-306|MAWBP|MAWDBP | |gene_alias=HEL-S-306|MAWBP|MAWDBP | ||
|gene_description=phenazine biosynthesis like protein domain containing | |gene_description=phenazine biosynthesis like protein domain containing | ||
| − | |gene_name= | + | |gene_id=3189 |
| + | |gene_name=heterogeneous nuclear ribonucleoprotein H3 | ||
| + | |gene_source=HGNC:5043 | ||
| + | |gene_symbol=HNRNPH3 | ||
| + | |gene_synonyms=2H9 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:5043 | ||
|nearest_ensembl=ENSG00000108187 | |nearest_ensembl=ENSG00000108187 | ||
|nearest_promoter_id=NM_022129 | |nearest_promoter_id=NM_022129 | ||
|nearest_refseq=NM_022129 | |nearest_refseq=NM_022129 | ||
|nearest_unigene=Hs.198158 | |nearest_unigene=Hs.198158 | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=68337215 | ||
| + | |strand=+ | ||
|tata_box="-46(TTTTTTATAGCA,+,0.00)" | |tata_box="-46(TTTTTTATAGCA,+,0.00)" | ||
| + | |transcript_name=AB528938 | ||
| + | |tss_classification=no | ||
|tss_id=hg_105237.1 | |tss_id=hg_105237.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:27, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB528938 |
|---|---|
| Distance: | 0 |
| Num_trans: | 7 |
| All_trans: | AB528938:0 ENST00000491200.5:361 uc057tqm.1:361 AF132362:361 ENST00000481819.5:-410 uc057tql.1:-410 AL117395:-410 |
TATA-Box annotation
| Distance to TSS: | -4308 |
|---|---|
| Nearest PromoterID: | NM_022129 |
| Entrez ID: | 64081 |
| Nearest Unigene: | Hs.198158 |
| Nearest Refseq: | NM_022129 |
| Nearest Ensembl: | ENSG00000108187 |
| Gene Name: | heterogeneous nuclear ribonucleoprotein H3 |
| Gene Alias: | HEL-S-306 |
| Gene Description: | phenazine biosynthesis like protein domain containing |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.368159 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-46(TTTTTTATAGCA,+,0.00)" |
