Difference between revisions of "TSS:Hg 105260.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.09 |distance_to_tss=86 |entrez_id=55749 |gc_percent=0.646766 |gene_alias=- |gene_description=cell division cycle and apoptosis regulator 1 |gene_nam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000265872.10:0 ENST00000538031.5:0 ENST00000543719.5:0 ENST00000541012.5:0 ENST00000543229.5:0 ENST00000539539.5:0 ENST00000543225.5:0 ENST00000536012.5:0 ENST00000494903.2:0 uc001joo.5:0 uc057tro.1:0 uc010qja.3:0 uc057trp.1:0 uc057trq.1:0 uc057trr.1:0 uc057trs.1:0 uc057trt.1:0 uc057tru.1:0 AK023438:0 AF465616:0 AK307550:0 AK298004:0 BC058846:0 AK001701:0 AY249140:0 AK292649:0 AK307704:0 AK122871:0 AK299307:0 AK307671:0 BX647943:0 ENST00000540210.5:2 uc057trv.1:2 BC130626:2 BC132725:2 BC144118:2 BC108682:13 ENST00000630771.2:-63 NM_001282960:-63 NM_001282959:-63 NM_018237:-63 NR_104262:-63 uc001jol.3:-63 ENST00000536391.5:-195 uc057trn.1:-195 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| + | |distance=0 | ||
|distance_to_tss=86 | |distance_to_tss=86 | ||
| + | |end=68721253 | ||
|entrez_id=55749 | |entrez_id=55749 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=cell division cycle and apoptosis regulator 1 | |gene_description=cell division cycle and apoptosis regulator 1 | ||
| − | |gene_name=CCAR1 | + | |gene_id=55749 |
| + | |gene_name=cell division cycle and apoptosis regulator 1 | ||
| + | |gene_source=HGNC:24236 | ||
| + | |gene_symbol=CCAR1 | ||
| + | |gene_synonyms=CARP-1 CARP1 FLJ10590 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:24236 | ||
|nearest_ensembl=ENSG00000060339 | |nearest_ensembl=ENSG00000060339 | ||
|nearest_promoter_id=NM_018237 | |nearest_promoter_id=NM_018237 | ||
|nearest_refseq=NM_018237 | |nearest_refseq=NM_018237 | ||
|nearest_unigene=Hs.49853 | |nearest_unigene=Hs.49853 | ||
| + | |num_trans=45 | ||
| + | |species=human | ||
| + | |start=68721206 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000265872.10 ENST00000538031.5 ENST00000543719.5 ENST00000541012.5 ENST00000543229.5 ENST00000539539.5 ENST00000543225.5 ENST00000536012.5 ENST00000494903.2 uc001joo.5 uc057tro.1 uc010qja.3 uc057trp.1 uc057trq.1 uc057trr.1 uc057trs.1 uc057trt.1 uc057tru.1 AK023438 AF465616 AK307550 AK298004 BC058846 AK001701 AY249140 AK292649 AK307704 AK122871 AK299307 AK307671 BX647943 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105260.1 | |tss_id=hg_105260.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A0C4DGG8 F5H1H2 F5H1L3 F5H2E6 F5H3E1 F5H7M9 F5H808 Q8IX12 | ||
}} | }} | ||
Revision as of 21:28, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000265872.10 ENST00000538031.5 ENST00000543719.5 ENST00000541012.5 ENST00000543229.5 ENST00000539539.5 ENST00000543225.5 ENST00000536012.5 ENST00000494903.2 uc001joo.5 uc057tro.1 uc010qja.3 uc057trp.1 uc057trq.1 uc057trr.1 uc057trs.1 uc057trt.1 uc057tru.1 AK023438 AF465616 AK307550 AK298004 BC058846 AK001701 AY249140 AK292649 AK307704 AK122871 AK299307 AK307671 BX647943 |
|---|---|
| Distance: | 0 |
| Num_trans: | 45 |
| All_trans: | ENST00000265872.10:0 ENST00000538031.5:0 ENST00000543719.5:0 ENST00000541012.5:0 ENST00000543229.5:0 ENST00000539539.5:0 ENST00000543225.5:0 ENST00000536012.5:0 ENST00000494903.2:0 uc001joo.5:0 uc057tro.1:0 uc010qja.3:0 uc057trp.1:0 uc057trq.1:0 uc057trr.1:0 uc057trs.1:0 uc057trt.1:0 uc057tru.1:0 AK023438:0 AF465616:0 AK307550:0 AK298004:0 BC058846:0 AK001701:0 AY249140:0 AK292649:0 AK307704:0 AK122871:0 AK299307:0 AK307671:0 BX647943:0 ENST00000540210.5:2 uc057trv.1:2 BC130626:2 BC132725:2 BC144118:2 BC108682:13 ENST00000630771.2:-63 NM_001282960:-63 NM_001282959:-63 NM_018237:-63 NR_104262:-63 uc001jol.3:-63 ENST00000536391.5:-195 uc057trn.1:-195 |
TATA-Box annotation
| Distance to TSS: | 86 |
|---|---|
| Nearest PromoterID: | NM_018237 |
| Entrez ID: | 55749 |
| Nearest Unigene: | Hs.49853 |
| Nearest Refseq: | NM_018237 |
| Nearest Ensembl: | ENSG00000060339 |
| Gene Name: | cell division cycle and apoptosis regulator 1 |
| Gene Alias: | - |
| Gene Description: | cell division cycle and apoptosis regulator 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
