Difference between revisions of "TSS:Hg 10540.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.155 |distance_to_tss=-6540 |entrez_id=114819 |gc_percent=0.79602 |gene_alias=CROCCL2|dJ798A10.2 |gene_description="ciliary rootlet coiled-coil, root...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000590118.5:0 ENST00000589964.1:0 BC028053:93 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
| + | |dJ798A10.2= | ||
| + | |distance=0 | ||
|distance_to_tss=-6540 | |distance_to_tss=-6540 | ||
| + | |end=16499270 | ||
|entrez_id=114819 | |entrez_id=114819 | ||
|gc_percent=0.79602 | |gc_percent=0.79602 | ||
|gene_alias=CROCCL2|dJ798A10.2 | |gene_alias=CROCCL2|dJ798A10.2 | ||
|gene_description="ciliary rootlet coiled-coil, rootletin pseudogene 3" | |gene_description="ciliary rootlet coiled-coil, rootletin pseudogene 3" | ||
| − | |gene_name=CROCCP3 | + | |gene_id=114819 |
| + | |gene_name="ciliary rootlet coiled-coil, rootletin pseudogene 3" | ||
| + | |gene_source=HGNC:29405 | ||
| + | |gene_symbol=CROCCP3 | ||
| + | |gene_synonyms=KIAA1922 | ||
|gene_type=pseudo | |gene_type=pseudo | ||
| + | |hgnc_mgi_id=HGNC:29405 | ||
|nearest_ensembl=ENSG00000080947 | |nearest_ensembl=ENSG00000080947 | ||
|nearest_promoter_id=NR_023386 | |nearest_promoter_id=NR_023386 | ||
|nearest_refseq=NR_023386 | |nearest_refseq=NR_023386 | ||
|nearest_unigene=Hs.597881 | |nearest_unigene=Hs.597881 | ||
| + | |num_trans=3 | ||
| + | |species=human | ||
| + | |start=16499211 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000590118.5 ENST00000589964.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10540.1 | |tss_id=hg_10540.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:34, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000590118.5 ENST00000589964.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 3 |
| All_trans: | ENST00000590118.5:0 ENST00000589964.1:0 BC028053:93 |
TATA-Box annotation
| Distance to TSS: | -6540 |
|---|---|
| Nearest PromoterID: | NR_023386 |
| Entrez ID: | 114819 |
| Nearest Unigene: | Hs.597881 |
| Nearest Refseq: | NR_023386 |
| Nearest Ensembl: | ENSG00000080947 |
| Gene Name: | "ciliary rootlet coiled-coil, rootletin pseudogene 3" |
| Gene Alias: | CROCCL2 |
| Gene Description: | "ciliary rootlet coiled-coil, rootletin pseudogene 3" |
| Gene Type: | pseudo |
| CpG%: | 0.155 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
