Difference between revisions of "TSS:Hg 10542.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.035 |distance_to_tss=1430 |entrez_id=100132147 |gc_percent=0.597015 |gene_alias=- |gene_description=long intergenic non-protein coding RNA 1783 |gen...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000516290.1:-1 uc057crw.1:-1 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| + | |distance=-1 | ||
|distance_to_tss=1430 | |distance_to_tss=1430 | ||
| + | |end=16534223 | ||
|entrez_id=100132147 | |entrez_id=100132147 | ||
|gc_percent=0.597015 | |gc_percent=0.597015 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=long intergenic non-protein coding RNA 1783 | |gene_description=long intergenic non-protein coding RNA 1783 | ||
| − | |gene_name= | + | |gene_id= |
| + | |gene_name="RNA, variant U1 small nuclear 7" | ||
| + | |gene_source=HGNC:37500 | ||
| + | |gene_symbol=RNVU1-7 | ||
| + | |gene_synonyms=vU1.7 vU1.9 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:37500 | ||
|nearest_ensembl=ENSG00000233421 | |nearest_ensembl=ENSG00000233421 | ||
|nearest_promoter_id=NR_135764 | |nearest_promoter_id=NR_135764 | ||
|nearest_refseq=NR_135764 | |nearest_refseq=NR_135764 | ||
|nearest_unigene=Hs.645945 | |nearest_unigene=Hs.645945 | ||
| + | |num_trans=2 | ||
| + | |species=human | ||
| + | |start=16534221 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000516290.1 uc057crw.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10542.1 | |tss_id=hg_10542.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:34, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000516290.1 uc057crw.1 |
|---|---|
| Distance: | -1 |
| Num_trans: | 2 |
| All_trans: | ENST00000516290.1:-1 uc057crw.1:-1 |
TATA-Box annotation
| Distance to TSS: | 1430 |
|---|---|
| Nearest PromoterID: | NR_135764 |
| Entrez ID: | 100132147 |
| Nearest Unigene: | Hs.645945 |
| Nearest Refseq: | NR_135764 |
| Nearest Ensembl: | ENSG00000233421 |
| Gene Name: | "RNA, variant U1 small nuclear 7" |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 1783 |
| Gene Type: | ncRNA |
| CpG%: | 0.035 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
