Difference between revisions of "TSS:Hg 10544.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.13 |distance_to_tss=118 |entrez_id=55672 |gc_percent=0.741294 |gene_alias=AB13|AB14|AB23|AD2|NBG|NBPF |gene_description=neuroblastoma breakpoint fam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |AB14= | ||
| + | |AB23= | ||
| + | |AD2= | ||
| + | |NBG= | ||
| + | |NBPF= | ||
| + | |all_trans=ENST00000430580.6:0 ENST00000432949.5:0 uc001ayw.5:0 uc057cry.1:0 AY894575:0 BC066930:-28 ENST00000449853.2:-41 uc001azc.3:-41 BC010124:-41 BC082236:-42 BC110431:-53 AK055895:-62 ENST00000599069.5:-69 uc001aza.6:-69 BC093404:-69 NM_017940:-112 AK123260:225 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| + | |distance=0 | ||
|distance_to_tss=118 | |distance_to_tss=118 | ||
| + | |end=16613493 | ||
|entrez_id=55672 | |entrez_id=55672 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
|gene_alias=AB13|AB14|AB23|AD2|NBG|NBPF | |gene_alias=AB13|AB14|AB23|AD2|NBG|NBPF | ||
|gene_description=neuroblastoma breakpoint family member 1 | |gene_description=neuroblastoma breakpoint family member 1 | ||
| − | |gene_name=NBPF1 | + | |gene_id=55672 |
| + | |gene_name=neuroblastoma breakpoint family member 1 | ||
| + | |gene_source=HGNC:26088 | ||
| + | |gene_symbol=NBPF1 | ||
| + | |gene_synonyms=FLJ20719 KIAA1693 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:26088 | ||
|nearest_ensembl=ENSG00000219481 | |nearest_ensembl=ENSG00000219481 | ||
|nearest_promoter_id=NM_017940 | |nearest_promoter_id=NM_017940 | ||
|nearest_refseq=NM_017940 | |nearest_refseq=NM_017940 | ||
|nearest_unigene=Hs.467587 | |nearest_unigene=Hs.467587 | ||
| + | |num_trans=17 | ||
| + | |species=human | ||
| + | |start=16613481 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000430580.6 ENST00000432949.5 uc001ayw.5 uc057cry.1 AY894575 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10544.1 | |tss_id=hg_10544.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=S4R2X0 S4R3K2 | ||
}} | }} | ||
Revision as of 21:35, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000430580.6 ENST00000432949.5 uc001ayw.5 uc057cry.1 AY894575 |
|---|---|
| Distance: | 0 |
| Num_trans: | 17 |
| All_trans: | ENST00000430580.6:0 ENST00000432949.5:0 uc001ayw.5:0 uc057cry.1:0 AY894575:0 BC066930:-28 ENST00000449853.2:-41 uc001azc.3:-41 BC010124:-41 BC082236:-42 BC110431:-53 AK055895:-62 ENST00000599069.5:-69 uc001aza.6:-69 BC093404:-69 NM_017940:-112 AK123260:225 |
TATA-Box annotation
| Distance to TSS: | 118 |
|---|---|
| Nearest PromoterID: | NM_017940 |
| Entrez ID: | 55672 |
| Nearest Unigene: | Hs.467587 |
| Nearest Refseq: | NM_017940 |
| Nearest Ensembl: | ENSG00000219481 |
| Gene Name: | neuroblastoma breakpoint family member 1 |
| Gene Alias: | AB13 |
| Gene Description: | neuroblastoma breakpoint family member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
