Difference between revisions of "TSS:Hg 10545.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=46 |entrez_id=55672 |gc_percent=0.711443 |gene_alias=AB13|AB14|AB23|AD2|NBG|NBPF |gene_description=neuroblastoma breakpoint fam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |AB14= | ||
| + | |AB23= | ||
| + | |AD2= | ||
| + | |NBG= | ||
| + | |NBPF= | ||
| + | |all_trans=ENST00000599069.5:0 ENST00000449853.2:0 NM_017940:0 uc001aza.6:0 uc001azc.3:0 BC093404:0 BC110431:0 AK055895:0 BC066930:0 BC010124:0 BC082236:0 ENST00000430580.6:21 ENST00000432949.5:21 uc001ayw.5:21 uc057cry.1:21 AY894575:21 AK123260:251 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=0 | ||
|distance_to_tss=46 | |distance_to_tss=46 | ||
| + | |end=16613610 | ||
|entrez_id=55672 | |entrez_id=55672 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
|gene_alias=AB13|AB14|AB23|AD2|NBG|NBPF | |gene_alias=AB13|AB14|AB23|AD2|NBG|NBPF | ||
|gene_description=neuroblastoma breakpoint family member 1 | |gene_description=neuroblastoma breakpoint family member 1 | ||
| − | |gene_name=NBPF1 | + | |gene_id=55672 |
| + | |gene_name=neuroblastoma breakpoint family member 1 | ||
| + | |gene_source=HGNC:26088 | ||
| + | |gene_symbol=NBPF1 | ||
| + | |gene_synonyms=FLJ20719 KIAA1693 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:26088 | ||
|nearest_ensembl=ENSG00000219481 | |nearest_ensembl=ENSG00000219481 | ||
|nearest_promoter_id=NM_017940 | |nearest_promoter_id=NM_017940 | ||
|nearest_refseq=NM_017940 | |nearest_refseq=NM_017940 | ||
|nearest_unigene=Hs.467587 | |nearest_unigene=Hs.467587 | ||
| + | |num_trans=17 | ||
| + | |species=human | ||
| + | |start=16613507 | ||
| + | |strand=- | ||
|tata_box="-83(GTCCCTTTAAGG,-,0.00),-81(CCCTTTAAGGCC,+,0.00),-80(CCTTTAAGGCCC,+,0.00)" | |tata_box="-83(GTCCCTTTAAGG,-,0.00),-81(CCCTTTAAGGCC,+,0.00),-80(CCTTTAAGGCCC,+,0.00)" | ||
| + | |transcript_name=ENST00000599069.5 ENST00000449853.2 NM_017940 uc001aza.6 uc001azc.3 BC093404 BC110431 AK055895 BC066930 BC010124 BC082236 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10545.1 | |tss_id=hg_10545.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q3BBV0 | ||
}} | }} | ||
Revision as of 21:36, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000599069.5 ENST00000449853.2 NM_017940 uc001aza.6 uc001azc.3 BC093404 BC110431 AK055895 BC066930 BC010124 BC082236 |
|---|---|
| Distance: | 0 |
| Num_trans: | 17 |
| All_trans: | ENST00000599069.5:0 ENST00000449853.2:0 NM_017940:0 uc001aza.6:0 uc001azc.3:0 BC093404:0 BC110431:0 AK055895:0 BC066930:0 BC010124:0 BC082236:0 ENST00000430580.6:21 ENST00000432949.5:21 uc001ayw.5:21 uc057cry.1:21 AY894575:21 AK123260:251 |
TATA-Box annotation
| Distance to TSS: | 46 |
|---|---|
| Nearest PromoterID: | NM_017940 |
| Entrez ID: | 55672 |
| Nearest Unigene: | Hs.467587 |
| Nearest Refseq: | NM_017940 |
| Nearest Ensembl: | ENSG00000219481 |
| Gene Name: | neuroblastoma breakpoint family member 1 |
| Gene Alias: | AB13 |
| Gene Description: | neuroblastoma breakpoint family member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-83(GTCCCTTTAAGG,-,0.00),-81(CCCTTTAAGGCC,+,0.00),-80(CCTTTAAGGCCC,+,0.00)" |
