Difference between revisions of "TSS:Hg 105474.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.16 |distance_to_tss=182 |entrez_id=9469 |gc_percent=0.766169 |gene_alias=C6ST|C6ST1|HSD |gene_description=carbohydrate sulfotransferase 3 |gene_name...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |C6ST1= | ||
| + | |HSD= | ||
| + | |all_trans=ENST00000373115.4:-171 uc001jsn.4:-171 AB012192:-171 NM_004273:-174 AB017915:-174 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
| + | |distance=-171 | ||
|distance_to_tss=182 | |distance_to_tss=182 | ||
| + | |end=71964552 | ||
|entrez_id=9469 | |entrez_id=9469 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
|gene_alias=C6ST|C6ST1|HSD | |gene_alias=C6ST|C6ST1|HSD | ||
|gene_description=carbohydrate sulfotransferase 3 | |gene_description=carbohydrate sulfotransferase 3 | ||
| − | |gene_name=CHST3 | + | |gene_id=9469 |
| + | |gene_name=carbohydrate (chondroitin 6) sulfotransferase 3 | ||
| + | |gene_source=HGNC:1971 | ||
| + | |gene_symbol=CHST3 | ||
| + | |gene_synonyms=C6ST C6ST1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:1971 | ||
|nearest_ensembl=ENSG00000122863 | |nearest_ensembl=ENSG00000122863 | ||
|nearest_promoter_id=NM_004273 | |nearest_promoter_id=NM_004273 | ||
|nearest_refseq=NM_004273 | |nearest_refseq=NM_004273 | ||
|nearest_unigene=Hs.158304 | |nearest_unigene=Hs.158304 | ||
| + | |num_trans=5 | ||
| + | |species=human | ||
| + | |start=71964535 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000373115.4 uc001jsn.4 AB012192 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105474.1 | |tss_id=hg_105474.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q7LGC8 | ||
}} | }} | ||
Revision as of 21:37, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000373115.4 uc001jsn.4 AB012192 |
|---|---|
| Distance: | -171 |
| Num_trans: | 5 |
| All_trans: | ENST00000373115.4:-171 uc001jsn.4:-171 AB012192:-171 NM_004273:-174 AB017915:-174 |
TATA-Box annotation
| Distance to TSS: | 182 |
|---|---|
| Nearest PromoterID: | NM_004273 |
| Entrez ID: | 9469 |
| Nearest Unigene: | Hs.158304 |
| Nearest Refseq: | NM_004273 |
| Nearest Ensembl: | ENSG00000122863 |
| Gene Name: | carbohydrate (chondroitin 6) sulfotransferase 3 |
| Gene Alias: | C6ST |
| Gene Description: | carbohydrate sulfotransferase 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
