Difference between revisions of "TSS:Hg 105516.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=184 |entrez_id=170392 |gc_percent=0.467662 |gene_alias=LZP |gene_description=oncoprotein induced transcript 3 |gene_name=OIT3 |...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=AY013707:-10 KJ903964:53 HQ258178:53 AY358339:-132 ENST00000622652.1:-151 uc057tze.1:-151 BC126440:-151 ENST00000334011.9:-154 uc001jte.2:-154 AK096435:-154 NM_152635:-179 NR_130125:-179 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=-10 | ||
|distance_to_tss=184 | |distance_to_tss=184 | ||
| + | |end=72893746 | ||
|entrez_id=170392 | |entrez_id=170392 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
|gene_alias=LZP | |gene_alias=LZP | ||
|gene_description=oncoprotein induced transcript 3 | |gene_description=oncoprotein induced transcript 3 | ||
| − | |gene_name=OIT3 | + | |gene_id=170392 |
| + | |gene_name=oncoprotein induced transcript 3 | ||
| + | |gene_source=HGNC:29953 | ||
| + | |gene_symbol=OIT3 | ||
| + | |gene_synonyms=FLJ39116 LZP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:29953 | ||
|nearest_ensembl=ENSG00000138315 | |nearest_ensembl=ENSG00000138315 | ||
|nearest_promoter_id=NR_130125 | |nearest_promoter_id=NR_130125 | ||
|nearest_refseq=NM_152635 | |nearest_refseq=NM_152635 | ||
|nearest_unigene=Hs.8366 | |nearest_unigene=Hs.8366 | ||
| + | |num_trans=12 | ||
| + | |species=human | ||
| + | |start=72893734 | ||
| + | |strand=+ | ||
|tata_box="-35(GGCCTTAAAAAA,-,0.00)" | |tata_box="-35(GGCCTTAAAAAA,-,0.00)" | ||
| + | |transcript_name=AY013707 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105516.1 | |tss_id=hg_105516.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:39, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AY013707 |
|---|---|
| Distance: | -10 |
| Num_trans: | 12 |
| All_trans: | AY013707:-10 KJ903964:53 HQ258178:53 AY358339:-132 ENST00000622652.1:-151 uc057tze.1:-151 BC126440:-151 ENST00000334011.9:-154 uc001jte.2:-154 AK096435:-154 NM_152635:-179 NR_130125:-179 |
TATA-Box annotation
| Distance to TSS: | 184 |
|---|---|
| Nearest PromoterID: | NR_130125 |
| Entrez ID: | 170392 |
| Nearest Unigene: | Hs.8366 |
| Nearest Refseq: | NM_152635 |
| Nearest Ensembl: | ENSG00000138315 |
| Gene Name: | oncoprotein induced transcript 3 |
| Gene Alias: | LZP |
| Gene Description: | oncoprotein induced transcript 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-35(GGCCTTAAAAAA,-,0.00)" |
