Difference between revisions of "TSS:Hg 105563.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.125 |distance_to_tss=31 |entrez_id=5328 |gc_percent=0.776119 |gene_alias=ATF|BDPLT5|QPD|UPA|URK|u-PA |gene_description="plasminogen activator, uroki...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |BDPLT5= | ||
| + | |QPD= | ||
| + | |UPA= | ||
| + | |URK= | ||
| + | |all_trans=AK312960:0 AK298560:0 AK297940:0 ENST00000494287.1:7 uc057ueq.1:7 ENST00000372764.3:17 uc001jwa.4:17 BC013575:18 ENST00000446342.5:-21 uc010qkw.3:-21 NM_002658:-24 NM_001145031:-24 NM_001319191:-24 K03226:30 M15476:37 D00244:44 X02760:70 AY029537:408 DQ893817:411 AB528526:414 CU680620:415 KJ897341:415 KR709719:415 KJ905272:415 BT007391:416 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| + | |distance=0 | ||
|distance_to_tss=31 | |distance_to_tss=31 | ||
| + | |end=73911140 | ||
|entrez_id=5328 | |entrez_id=5328 | ||
|gc_percent=0.776119 | |gc_percent=0.776119 | ||
|gene_alias=ATF|BDPLT5|QPD|UPA|URK|u-PA | |gene_alias=ATF|BDPLT5|QPD|UPA|URK|u-PA | ||
|gene_description="plasminogen activator, urokinase" | |gene_description="plasminogen activator, urokinase" | ||
| − | |gene_name=PLAU | + | |gene_id=5328 |
| + | |gene_name="plasminogen activator, urokinase" | ||
| + | |gene_source=HGNC:9052 | ||
| + | |gene_symbol=PLAU | ||
| + | |gene_synonyms=UPA URK | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9052 | ||
|nearest_ensembl=ENSG00000122861 | |nearest_ensembl=ENSG00000122861 | ||
|nearest_promoter_id=NM_001319191 | |nearest_promoter_id=NM_001319191 | ||
|nearest_refseq=NM_002658 | |nearest_refseq=NM_002658 | ||
|nearest_unigene=Hs.77274 | |nearest_unigene=Hs.77274 | ||
| + | |num_trans=25 | ||
| + | |species=human | ||
| + | |start=73911124 | ||
| + | |strand=+ | ||
| + | |transcript_name=AK312960 AK298560 AK297940 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105563.1 | |tss_id=hg_105563.1 | ||
| + | |tss_score=1 | ||
| + | |u-PA= | ||
| + | |uniprot_id=B2R7F2 B4DNJ4 | ||
}} | }} | ||
Revision as of 21:41, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK312960 AK298560 AK297940 |
|---|---|
| Distance: | 0 |
| Num_trans: | 25 |
| All_trans: | AK312960:0 AK298560:0 AK297940:0 ENST00000494287.1:7 uc057ueq.1:7 ENST00000372764.3:17 uc001jwa.4:17 BC013575:18 ENST00000446342.5:-21 uc010qkw.3:-21 NM_002658:-24 NM_001145031:-24 NM_001319191:-24 K03226:30 M15476:37 D00244:44 X02760:70 AY029537:408 DQ893817:411 AB528526:414 CU680620:415 KJ897341:415 KR709719:415 KJ905272:415 BT007391:416 |
TATA-Box annotation
| Distance to TSS: | 31 |
|---|---|
| Nearest PromoterID: | NM_001319191 |
| Entrez ID: | 5328 |
| Nearest Unigene: | Hs.77274 |
| Nearest Refseq: | NM_002658 |
| Nearest Ensembl: | ENSG00000122861 |
| Gene Name: | "plasminogen activator, urokinase" |
| Gene Alias: | ATF |
| Gene Description: | "plasminogen activator, urokinase" |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
