Difference between revisions of "TSS:Hg 10561.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.025 |distance_to_tss=-429 |entrez_id=4237 |gc_percent=0.58209 |gene_alias=MAGP|MAGP-1|MAGP1 |gene_description=microfibrillar associated protein 2 |g...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |MAGP-1= | ||
| + | |MAGP1= | ||
| + | |all_trans=ENST00000375535.3:247 uc001azw.4:247 NM_002403:404 NM_001135248:404 BC015039:404 AK222751:442 AK301655:-446 ENST00000476788.5:450 uc057ctb.1:450 NM_017459:-454 NM_001135247:-454 ENST00000490075.5:461 uc057cta.1:461 BC028033:461 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| + | |distance=247 | ||
|distance_to_tss=-429 | |distance_to_tss=-429 | ||
| + | |end=16981132 | ||
|entrez_id=4237 | |entrez_id=4237 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
|gene_alias=MAGP|MAGP-1|MAGP1 | |gene_alias=MAGP|MAGP-1|MAGP1 | ||
|gene_description=microfibrillar associated protein 2 | |gene_description=microfibrillar associated protein 2 | ||
| − | |gene_name=MFAP2 | + | |gene_id=4237 |
| + | |gene_name=microfibrillar associated protein 2 | ||
| + | |gene_source=HGNC:7033 | ||
| + | |gene_symbol=MFAP2 | ||
| + | |gene_synonyms=MAGP MAGP-1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:7033 | ||
|nearest_ensembl=ENSG00000117122 | |nearest_ensembl=ENSG00000117122 | ||
|nearest_promoter_id=NM_002403 | |nearest_promoter_id=NM_002403 | ||
|nearest_refseq=NM_002403 | |nearest_refseq=NM_002403 | ||
|nearest_unigene=Hs.389137 | |nearest_unigene=Hs.389137 | ||
| + | |num_trans=14 | ||
| + | |species=human | ||
| + | |start=16981081 | ||
| + | |strand=- | ||
|tata_box="-48(CTCTAGAAAAGG,-,0.00)" | |tata_box="-48(CTCTAGAAAAGG,-,0.00)" | ||
| + | |transcript_name=ENST00000375535.3 uc001azw.4 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10561.1 | |tss_id=hg_10561.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024RA94 P55001 | ||
}} | }} | ||
Revision as of 21:43, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000375535.3 uc001azw.4 |
|---|---|
| Distance: | 247 |
| Num_trans: | 14 |
| All_trans: | ENST00000375535.3:247 uc001azw.4:247 NM_002403:404 NM_001135248:404 BC015039:404 AK222751:442 AK301655:-446 ENST00000476788.5:450 uc057ctb.1:450 NM_017459:-454 NM_001135247:-454 ENST00000490075.5:461 uc057cta.1:461 BC028033:461 |
TATA-Box annotation
| Distance to TSS: | -429 |
|---|---|
| Nearest PromoterID: | NM_002403 |
| Entrez ID: | 4237 |
| Nearest Unigene: | Hs.389137 |
| Nearest Refseq: | NM_002403 |
| Nearest Ensembl: | ENSG00000117122 |
| Gene Name: | microfibrillar associated protein 2 |
| Gene Alias: | MAGP |
| Gene Description: | microfibrillar associated protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-48(CTCTAGAAAAGG,-,0.00)" |
