Difference between revisions of "TSS:Hg 105611.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.17 |distance_to_tss=-19 |entrez_id=142891 |gc_percent=0.810945 |gene_alias=HEL-177|SMSr |gene_description=sterile alpha motif domain containing 8 |g...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SMSr= | ||
| + | |all_trans=ENST00000542569.5:0 NM_144660:0 NM_001174156:0 uc001jwx.2:0 BC080593:0 ENST00000372687.4:73 uc001jwy.3:73 AK057811:73 EU668332:73 GQ472208:73 ENST00000372690.7:-125 uc057ufy.1:-125 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.17 | |cpg_percent=0.17 | ||
| + | |distance=0 | ||
|distance_to_tss=-19 | |distance_to_tss=-19 | ||
| + | |end=75111636 | ||
|entrez_id=142891 | |entrez_id=142891 | ||
|gc_percent=0.810945 | |gc_percent=0.810945 | ||
|gene_alias=HEL-177|SMSr | |gene_alias=HEL-177|SMSr | ||
|gene_description=sterile alpha motif domain containing 8 | |gene_description=sterile alpha motif domain containing 8 | ||
| − | |gene_name=SAMD8 | + | |gene_id=142891 |
| + | |gene_name=sterile alpha motif domain containing 8 | ||
| + | |gene_source=HGNC:26320 | ||
| + | |gene_symbol=SAMD8 | ||
| + | |gene_synonyms=FLJ25082 SMSr | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:26320 | ||
|nearest_ensembl=ENSG00000156671 | |nearest_ensembl=ENSG00000156671 | ||
|nearest_promoter_id=NM_001174156 | |nearest_promoter_id=NM_001174156 | ||
|nearest_refseq=NM_144660 | |nearest_refseq=NM_144660 | ||
|nearest_unigene=Hs.744986 | |nearest_unigene=Hs.744986 | ||
| + | |num_trans=12 | ||
| + | |species=human | ||
| + | |start=75111595 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000542569.5 NM_144660 NM_001174156 uc001jwx.2 BC080593 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105611.1 | |tss_id=hg_105611.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q96LT4 V9HVY4 | ||
}} | }} | ||
Revision as of 21:43, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000542569.5 NM_144660 NM_001174156 uc001jwx.2 BC080593 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | ENST00000542569.5:0 NM_144660:0 NM_001174156:0 uc001jwx.2:0 BC080593:0 ENST00000372687.4:73 uc001jwy.3:73 AK057811:73 EU668332:73 GQ472208:73 ENST00000372690.7:-125 uc057ufy.1:-125 |
TATA-Box annotation
| Distance to TSS: | -19 |
|---|---|
| Nearest PromoterID: | NM_001174156 |
| Entrez ID: | 142891 |
| Nearest Unigene: | Hs.744986 |
| Nearest Refseq: | NM_144660 |
| Nearest Ensembl: | ENSG00000156671 |
| Gene Name: | sterile alpha motif domain containing 8 |
| Gene Alias: | HEL-177 |
| Gene Description: | sterile alpha motif domain containing 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.17 |
| GC%: | 0.810945 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
