Difference between revisions of "TSS:Hg 105812.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |PSAP= | ||
| + | |PSP-A= | ||
| + | |PSPA= | ||
| + | |SFTP1= | ||
| + | |SFTPA1B= | ||
| + | |SP-A= | ||
| + | |SP-A1= | ||
| + | |SPA= | ||
| + | |SPA1= | ||
| + | |all_trans=ENST00000398636.7:44 ENST00000428376.6:44 NM_005411:44 NM_001164646:44 NM_001093770:44 NM_001164645:44 NM_001164644:44 NM_001164647:44 uc001kap.4:44 uc001kar.4:44 AK290703:44 AK298002:44 AK298034:44 AK298029:44 AK316196:45 HQ021433:45 HQ021434:45 HQ021435:45 HQ021436:45 HQ021437:45 HQ021438:45 HQ021439:45 HQ021440:45 HQ021441:45 HQ021442:45 JX502764:45 JX502765:45 AK298092:47 S69687:49 S69688:49 S69690:49 AK309518:49 ENST00000419470.6:50 uc009xry.4:50 BC026229:50 M13686:56 ENST00000429958.5:58 uc057ulj.1:58 ENST00000439264.1:60 uc057ulk.1:60 BC111570:65 ENST00000486922.1:66 uc057ull.1:66 BC029913:424 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=44 | ||
|distance_to_tss=-50 | |distance_to_tss=-50 | ||
| + | |end=79610895 | ||
|entrez_id=653509 | |entrez_id=653509 | ||
|gc_percent=0.557214 | |gc_percent=0.557214 | ||
|gene_alias=COLEC4|PSAP|PSP-A|PSPA|SFTP1|SFTPA1B|SP-A|SP-A1|SPA|SPA1 | |gene_alias=COLEC4|PSAP|PSP-A|PSPA|SFTP1|SFTPA1B|SP-A|SP-A1|SPA|SPA1 | ||
|gene_description=surfactant protein A1 | |gene_description=surfactant protein A1 | ||
| − | |gene_name=SFTPA1 | + | |gene_id=653509 |
| + | |gene_name=surfactant protein A1 | ||
| + | |gene_source=HGNC:10798 | ||
| + | |gene_symbol=SFTPA1 | ||
| + | |gene_synonyms=COLEC4 SP-A SP-A1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:10798 | ||
|nearest_ensembl=ENSG00000122852 | |nearest_ensembl=ENSG00000122852 | ||
|nearest_promoter_id=NM_001164647 | |nearest_promoter_id=NM_001164647 | ||
|nearest_refseq=NM_005411 | |nearest_refseq=NM_005411 | ||
|nearest_unigene=Hs.535295 | |nearest_unigene=Hs.535295 | ||
| + | |num_trans=44 | ||
| + | |species=human | ||
| + | |start=79610882 | ||
| + | |strand=+ | ||
|tata_box="19(ATCTATAAATGC,-,0.00)" | |tata_box="19(ATCTATAAATGC,-,0.00)" | ||
| + | |transcript_name=ENST00000398636.7 ENST00000428376.6 NM_005411 NM_001164646 NM_001093770 NM_001164645 NM_001164644 NM_001164647 uc001kap.4 uc001kar.4 AK290703 AK298002 AK298034 AK298029 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105812.1 | |tss_id=hg_105812.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024QZP2 B4DNP6 B4DNR9 B4DNS3 Q8IWL2 | ||
}} | }} | ||
Revision as of 21:51, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000398636.7 ENST00000428376.6 NM_005411 NM_001164646 NM_001093770 NM_001164645 NM_001164644 NM_001164647 uc001kap.4 uc001kar.4 AK290703 AK298002 AK298034 AK298029 |
|---|---|
| Distance: | 44 |
| Num_trans: | 44 |
| All_trans: | ENST00000398636.7:44 ENST00000428376.6:44 NM_005411:44 NM_001164646:44 NM_001093770:44 NM_001164645:44 NM_001164644:44 NM_001164647:44 uc001kap.4:44 uc001kar.4:44 AK290703:44 AK298002:44 AK298034:44 AK298029:44 AK316196:45 HQ021433:45 HQ021434:45 HQ021435:45 HQ021436:45 HQ021437:45 HQ021438:45 HQ021439:45 HQ021440:45 HQ021441:45 HQ021442:45 JX502764:45 JX502765:45 AK298092:47 S69687:49 S69688:49 S69690:49 AK309518:49 ENST00000419470.6:50 uc009xry.4:50 BC026229:50 M13686:56 ENST00000429958.5:58 uc057ulj.1:58 ENST00000439264.1:60 uc057ulk.1:60 BC111570:65 ENST00000486922.1:66 uc057ull.1:66 BC029913:424 |
TATA-Box annotation
| Distance to TSS: | -50 |
|---|---|
| Nearest PromoterID: | NM_001164647 |
| Entrez ID: | 653509 |
| Nearest Unigene: | Hs.535295 |
| Nearest Refseq: | NM_005411 |
| Nearest Ensembl: | ENSG00000122852 |
| Gene Name: | surfactant protein A1 |
| Gene Alias: | COLEC4 |
| Gene Description: | surfactant protein A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.557214 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "19(ATCTATAAATGC,-,0.00)" |
