Difference between revisions of "TSS:Hg 105865.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=15 |entrez_id=84293 |gc_percent=0.587065 |gene_alias=C10orf58|PAMM |gene_description=family with sequence similarity 213 member...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PAMM= | ||
| + | |all_trans=ENST00000372187.9:0 NM_001243782:0 NM_001243778:0 uc001kce.5:0 AK126292:0 AK225387:0 BC005871:7 BC071938:7 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=0 | ||
|distance_to_tss=15 | |distance_to_tss=15 | ||
| + | |end=80413850 | ||
|entrez_id=84293 | |entrez_id=84293 | ||
|gc_percent=0.587065 | |gc_percent=0.587065 | ||
|gene_alias=C10orf58|PAMM | |gene_alias=C10orf58|PAMM | ||
|gene_description=family with sequence similarity 213 member A | |gene_description=family with sequence similarity 213 member A | ||
| − | |gene_name=FAM213A | + | |gene_id=84293 |
| + | |gene_name=family with sequence similarity 213 member A | ||
| + | |gene_source=HGNC:28651 | ||
| + | |gene_symbol=FAM213A | ||
| + | |gene_synonyms=MGC4248 PAMM | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:28651 | ||
|nearest_ensembl=ENSG00000122378 | |nearest_ensembl=ENSG00000122378 | ||
|nearest_promoter_id=NM_001243782 | |nearest_promoter_id=NM_001243782 | ||
|nearest_refseq=NM_032333 | |nearest_refseq=NM_032333 | ||
|nearest_unigene=Hs.500333 | |nearest_unigene=Hs.500333 | ||
| + | |num_trans=8 | ||
| + | |species=human | ||
| + | |start=80413817 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000372187.9 NM_001243782 NM_001243778 uc001kce.5 AK126292 AK225387 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105865.1 | |tss_id=hg_105865.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q9BRX8 | ||
}} | }} | ||
Revision as of 21:54, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000372187.9 NM_001243782 NM_001243778 uc001kce.5 AK126292 AK225387 |
|---|---|
| Distance: | 0 |
| Num_trans: | 8 |
| All_trans: | ENST00000372187.9:0 NM_001243782:0 NM_001243778:0 uc001kce.5:0 AK126292:0 AK225387:0 BC005871:7 BC071938:7 |
TATA-Box annotation
| Distance to TSS: | 15 |
|---|---|
| Nearest PromoterID: | NM_001243782 |
| Entrez ID: | 84293 |
| Nearest Unigene: | Hs.500333 |
| Nearest Refseq: | NM_032333 |
| Nearest Ensembl: | ENSG00000122378 |
| Gene Name: | family with sequence similarity 213 member A |
| Gene Alias: | C10orf58 |
| Gene Description: | family with sequence similarity 213 member A |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
