Difference between revisions of "TSS:Hg 105931.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=-116 |entrez_id=92211 |gc_percent=0.726368 |gene_alias=CORD15|PCDH21|PRCAD|RP65 |gene_description=cadherin related family member...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PCDH21= | ||
| + | |PRCAD= | ||
| + | |RP65= | ||
| + | |all_trans=ENST00000623527.3:111 NM_033100:111 NM_001171971:111 uc001kcv.4:111 AB593154:111 AB593155:125 ENST00000332904.7:126 uc001kcw.5:126 BC038799:132 AB463200:236 AB053448:238 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| + | |distance=111 | ||
|distance_to_tss=-116 | |distance_to_tss=-116 | ||
| + | |end=84194524 | ||
|entrez_id=92211 | |entrez_id=92211 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
|gene_alias=CORD15|PCDH21|PRCAD|RP65 | |gene_alias=CORD15|PCDH21|PRCAD|RP65 | ||
|gene_description=cadherin related family member 1 | |gene_description=cadherin related family member 1 | ||
| − | |gene_name=CDHR1 | + | |gene_id=92211 |
| + | |gene_name=cadherin related family member 1 | ||
| + | |gene_source=HGNC:14550 | ||
| + | |gene_symbol=CDHR1 | ||
| + | |gene_synonyms=CORD15 KIAA1775 RP65 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:14550 | ||
|nearest_ensembl=ENSG00000148600 | |nearest_ensembl=ENSG00000148600 | ||
|nearest_promoter_id=NM_001171971 | |nearest_promoter_id=NM_001171971 | ||
|nearest_refseq=NM_033100 | |nearest_refseq=NM_033100 | ||
|nearest_unigene=Hs.137556 | |nearest_unigene=Hs.137556 | ||
| + | |num_trans=11 | ||
| + | |species=human | ||
| + | |start=84194513 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000623527.3 NM_033100 NM_001171971 uc001kcv.4 AB593154 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105931.1 | |tss_id=hg_105931.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=F1T0L2 Q96JP9 | ||
}} | }} | ||
Revision as of 21:56, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000623527.3 NM_033100 NM_001171971 uc001kcv.4 AB593154 |
|---|---|
| Distance: | 111 |
| Num_trans: | 11 |
| All_trans: | ENST00000623527.3:111 NM_033100:111 NM_001171971:111 uc001kcv.4:111 AB593154:111 AB593155:125 ENST00000332904.7:126 uc001kcw.5:126 BC038799:132 AB463200:236 AB053448:238 |
TATA-Box annotation
| Distance to TSS: | -116 |
|---|---|
| Nearest PromoterID: | NM_001171971 |
| Entrez ID: | 92211 |
| Nearest Unigene: | Hs.137556 |
| Nearest Refseq: | NM_033100 |
| Nearest Ensembl: | ENSG00000148600 |
| Gene Name: | cadherin related family member 1 |
| Gene Alias: | CORD15 |
| Gene Description: | cadherin related family member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
