Difference between revisions of "TSS:Hg 1061.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=104 |entrez_id=54896 |gc_percent=0.756219 |gene_alias=- |gene_description=PQ loop repeat containing 2 |gene_name=PQLC2 |gene_ty...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000400548.6:-8 uc001bbz.4:-8 BC015324:-8 BC021040:8 ENST00000469076.5:-19 uc057cwq.1:-19 AK172745:-19 ENST00000375153.7:-21 uc001bca.4:-21 AK125580:-21 AK130171:-21 ENST00000375155.7:-23 uc001bby.4:-23 AK130175:-23 AK000327:-23 NM_001287531:-103 NM_017765:-103 NM_001040126:-103 NM_001040125:-103 NR_109848:-103 ENST00000497827.1:378 uc057cwr.1:378 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=-8 | ||
|distance_to_tss=104 | |distance_to_tss=104 | ||
| + | |end=19312351 | ||
|entrez_id=54896 | |entrez_id=54896 | ||
|gc_percent=0.756219 | |gc_percent=0.756219 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=PQ loop repeat containing 2 | |gene_description=PQ loop repeat containing 2 | ||
| − | |gene_name=PQLC2 | + | |gene_id=54896 |
| + | |gene_name=PQ loop repeat containing 2 | ||
| + | |gene_source=HGNC:26001 | ||
| + | |gene_symbol=PQLC2 | ||
| + | |gene_synonyms=FLJ20320 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:26001 | ||
|nearest_ensembl=ENSG00000040487 | |nearest_ensembl=ENSG00000040487 | ||
|nearest_promoter_id=NM_001040125 | |nearest_promoter_id=NM_001040125 | ||
|nearest_refseq=NM_017765 | |nearest_refseq=NM_017765 | ||
|nearest_unigene=Hs.647620 | |nearest_unigene=Hs.647620 | ||
| + | |num_trans=22 | ||
| + | |species=human | ||
| + | |start=19312348 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000400548.6 uc001bbz.4 BC015324 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_1061.1 | |tss_id=hg_1061.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024RAA1 Q6ZP29 | ||
}} | }} | ||
Revision as of 22:04, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000400548.6 uc001bbz.4 BC015324 |
|---|---|
| Distance: | -8 |
| Num_trans: | 22 |
| All_trans: | ENST00000400548.6:-8 uc001bbz.4:-8 BC015324:-8 BC021040:8 ENST00000469076.5:-19 uc057cwq.1:-19 AK172745:-19 ENST00000375153.7:-21 uc001bca.4:-21 AK125580:-21 AK130171:-21 ENST00000375155.7:-23 uc001bby.4:-23 AK130175:-23 AK000327:-23 NM_001287531:-103 NM_017765:-103 NM_001040126:-103 NM_001040125:-103 NR_109848:-103 ENST00000497827.1:378 uc057cwr.1:378 |
TATA-Box annotation
| Distance to TSS: | 104 |
|---|---|
| Nearest PromoterID: | NM_001040125 |
| Entrez ID: | 54896 |
| Nearest Unigene: | Hs.647620 |
| Nearest Refseq: | NM_017765 |
| Nearest Ensembl: | ENSG00000040487 |
| Gene Name: | PQ loop repeat containing 2 |
| Gene Alias: | - |
| Gene Description: | PQ loop repeat containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
