Difference between revisions of "TSS:Hg 106128.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=172 |entrez_id=3437 |gc_percent=0.457711 |gene_alias=CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41 |gene_description=in...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |GARG-49= | ||
| + | |IFI60= | ||
| + | |IFIT4= | ||
| + | |IRG2= | ||
| + | |ISG60= | ||
| + | |P60= | ||
| + | |RIG-G= | ||
| + | |all_trans=AF083470:0 AK312675:0 U52513:8 AK290427:-68 ENST00000371818.8:-83 uc001kgf.5:-83 NM_001289758:-158 NM_001549:-158 | ||
| + | |chr=chr10 | ||
| + | |cig41= | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=0 | ||
|distance_to_tss=172 | |distance_to_tss=172 | ||
| + | |end=89328005 | ||
|entrez_id=3437 | |entrez_id=3437 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
|gene_alias=CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41 | |gene_alias=CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41 | ||
|gene_description=interferon induced protein with tetratricopeptide repeats 3 | |gene_description=interferon induced protein with tetratricopeptide repeats 3 | ||
| − | |gene_name=IFIT3 | + | |gene_id=3437 |
| + | |gene_name=interferon induced protein with tetratricopeptide repeats 3 | ||
| + | |gene_source=HGNC:5411 | ||
| + | |gene_symbol=IFIT3 | ||
| + | |gene_synonyms=CIG-49 GARG-49 IFI60 IRG2 ISG60 RIG-G | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:5411 | ||
|nearest_ensembl=ENSG00000119917 | |nearest_ensembl=ENSG00000119917 | ||
|nearest_promoter_id=NM_001549 | |nearest_promoter_id=NM_001549 | ||
|nearest_refseq=NM_001549 | |nearest_refseq=NM_001549 | ||
|nearest_unigene=Hs.47338 | |nearest_unigene=Hs.47338 | ||
| + | |num_trans=8 | ||
| + | |species=human | ||
| + | |start=89327976 | ||
| + | |strand=+ | ||
|tata_box="-91(TCCCCTAAAAGC,-,0.00),-27(CCCTTTATATAG,+,0.00),-27(CCCTTTATATAG,-,0.00),-25(CTTTATATAGTT,+,0.00)" | |tata_box="-91(TCCCCTAAAAGC,-,0.00),-27(CCCTTTATATAG,+,0.00),-27(CCCTTTATATAG,-,0.00),-25(CTTTATATAGTT,+,0.00)" | ||
| + | |transcript_name=AF083470 AK312675 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106128.1 | |tss_id=hg_106128.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 22:05, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AF083470 AK312675 |
|---|---|
| Distance: | 0 |
| Num_trans: | 8 |
| All_trans: | AF083470:0 AK312675:0 U52513:8 AK290427:-68 ENST00000371818.8:-83 uc001kgf.5:-83 NM_001289758:-158 NM_001549:-158 |
TATA-Box annotation
| Distance to TSS: | 172 |
|---|---|
| Nearest PromoterID: | NM_001549 |
| Entrez ID: | 3437 |
| Nearest Unigene: | Hs.47338 |
| Nearest Refseq: | NM_001549 |
| Nearest Ensembl: | ENSG00000119917 |
| Gene Name: | interferon induced protein with tetratricopeptide repeats 3 |
| Gene Alias: | CIG-49 |
| Gene Description: | interferon induced protein with tetratricopeptide repeats 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-91(TCCCCTAAAAGC,-,0.00),-27(CCCTTTATATAG,+,0.00),-27(CCCTTTATATAG,-,0.00),-25(CTTTATATAGTT,+,0.00)" |
