Difference between revisions of "TSS:Hg 10616.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.05 |distance_to_tss=61 |entrez_id=8659 |gc_percent=0.497512 |gene_alias=ALDH4|P5CD|P5CDh |gene_description=aldehyde dehydrogenase 4 family member A1...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |P5CD= | ||
| + | |P5CDh= | ||
| + | |all_trans=ENST00000432718.1:9 uc057cvc.1:9 AK289972:9 ENST00000375341.7:-38 uc001bbc.4:-38 NM_003748:-56 NM_170726:-56 NM_001319218:-56 ENST00000290597.9:180 uc001bbb.4:180 U24266:180 U24267:180 AK222486:180 BC023600:193 BC007581:204 ENST00000538839.5:205 uc021ohl.2:205 FJ462711:205 KR710110:210 KJ897887:210 DQ893505:210 DQ896489:210 AB587364:210 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| + | |distance=9 | ||
|distance_to_tss=61 | |distance_to_tss=61 | ||
| + | |end=18902743 | ||
|entrez_id=8659 | |entrez_id=8659 | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
|gene_alias=ALDH4|P5CD|P5CDh | |gene_alias=ALDH4|P5CD|P5CDh | ||
|gene_description=aldehyde dehydrogenase 4 family member A1 | |gene_description=aldehyde dehydrogenase 4 family member A1 | ||
| − | |gene_name=ALDH4A1 | + | |gene_id=8659 |
| + | |gene_name=aldehyde dehydrogenase 4 family member A1 | ||
| + | |gene_source=HGNC:406 | ||
| + | |gene_symbol=ALDH4A1 | ||
| + | |gene_synonyms=P5CDh | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:406 | ||
|nearest_ensembl=ENSG00000159423 | |nearest_ensembl=ENSG00000159423 | ||
|nearest_promoter_id=NM_170726 | |nearest_promoter_id=NM_170726 | ||
|nearest_refseq=NM_003748 | |nearest_refseq=NM_003748 | ||
|nearest_unigene=Hs.77448 | |nearest_unigene=Hs.77448 | ||
| + | |num_trans=23 | ||
| + | |species=human | ||
| + | |start=18902732 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000432718.1 uc057cvc.1 AK289972 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10616.1 | |tss_id=hg_10616.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5TF55 | ||
}} | }} | ||
Revision as of 22:06, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000432718.1 uc057cvc.1 AK289972 |
|---|---|
| Distance: | 9 |
| Num_trans: | 23 |
| All_trans: | ENST00000432718.1:9 uc057cvc.1:9 AK289972:9 ENST00000375341.7:-38 uc001bbc.4:-38 NM_003748:-56 NM_170726:-56 NM_001319218:-56 ENST00000290597.9:180 uc001bbb.4:180 U24266:180 U24267:180 AK222486:180 BC023600:193 BC007581:204 ENST00000538839.5:205 uc021ohl.2:205 FJ462711:205 KR710110:210 KJ897887:210 DQ893505:210 DQ896489:210 AB587364:210 |
TATA-Box annotation
| Distance to TSS: | 61 |
|---|---|
| Nearest PromoterID: | NM_170726 |
| Entrez ID: | 8659 |
| Nearest Unigene: | Hs.77448 |
| Nearest Refseq: | NM_003748 |
| Nearest Ensembl: | ENSG00000159423 |
| Gene Name: | aldehyde dehydrogenase 4 family member A1 |
| Gene Alias: | ALDH4 |
| Gene Description: | aldehyde dehydrogenase 4 family member A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
