Difference between revisions of "TSS:Hg 106166.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.045 |distance_to_tss=83 |entrez_id=643529 |gc_percent=0.378109 |gene_alias=- |gene_description=long intergenic non-protein coding RNA 865 |gene_name...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000448490.1:-18 uc001kgw.3:-18 AL137595:-18 ENST00000448963.5:-64 uc001kgv.3:-64 BC033541:-64 BC035398:-64 NR_038382:-81 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| + | |distance=-18 | ||
|distance_to_tss=83 | |distance_to_tss=83 | ||
| + | |end=89829579 | ||
|entrez_id=643529 | |entrez_id=643529 | ||
|gc_percent=0.378109 | |gc_percent=0.378109 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=long intergenic non-protein coding RNA 865 | |gene_description=long intergenic non-protein coding RNA 865 | ||
| − | |gene_name=LINC00865 | + | |gene_id=643529 |
| + | |gene_name=long intergenic non-protein coding RNA 865 | ||
| + | |gene_source=HGNC:45170 | ||
| + | |gene_symbol=LINC00865 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:45170 | ||
|nearest_ensembl=ENSG00000232229 | |nearest_ensembl=ENSG00000232229 | ||
|nearest_promoter_id=NR_038382 | |nearest_promoter_id=NR_038382 | ||
|nearest_refseq=NR_038382 | |nearest_refseq=NR_038382 | ||
|nearest_unigene=Hs.618956 | |nearest_unigene=Hs.618956 | ||
| + | |num_trans=8 | ||
| + | |species=human | ||
| + | |start=89829573 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000448490.1 uc001kgw.3 AL137595 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106166.1 | |tss_id=hg_106166.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 22:07, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000448490.1 uc001kgw.3 AL137595 |
|---|---|
| Distance: | -18 |
| Num_trans: | 8 |
| All_trans: | ENST00000448490.1:-18 uc001kgw.3:-18 AL137595:-18 ENST00000448963.5:-64 uc001kgv.3:-64 BC033541:-64 BC035398:-64 NR_038382:-81 |
TATA-Box annotation
| Distance to TSS: | 83 |
|---|---|
| Nearest PromoterID: | NR_038382 |
| Entrez ID: | 643529 |
| Nearest Unigene: | Hs.618956 |
| Nearest Refseq: | NR_038382 |
| Nearest Ensembl: | ENSG00000232229 |
| Gene Name: | long intergenic non-protein coding RNA 865 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 865 |
| Gene Type: | ncRNA |
| CpG%: | 0.045 |
| GC%: | 0.378109 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
