Difference between revisions of "TSS:Hg 106213.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.13 |distance_to_tss=118 |entrez_id=84333 |gc_percent=0.771144 |gene_alias=RNF159 |gene_description=polycomb group ring finger 5 |gene_name=PCGF5 |ge...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000490164.1:55 uc031pwu.2:55 ENST00000336126.5:60 uc001khi.5:60 AL832496:60 NR_046310:-110 NM_032373:-110 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| + | |distance=55 | ||
|distance_to_tss=118 | |distance_to_tss=118 | ||
| + | |end=91220728 | ||
|entrez_id=84333 | |entrez_id=84333 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
|gene_alias=RNF159 | |gene_alias=RNF159 | ||
|gene_description=polycomb group ring finger 5 | |gene_description=polycomb group ring finger 5 | ||
| − | |gene_name=PCGF5 | + | |gene_id=84333 |
| + | |gene_name=polycomb group ring finger 5 | ||
| + | |gene_source=HGNC:28264 | ||
| + | |gene_symbol=PCGF5 | ||
| + | |gene_synonyms=MGC16202 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:28264 | ||
|nearest_ensembl=ENSG00000180628 | |nearest_ensembl=ENSG00000180628 | ||
|nearest_promoter_id=NR_046310 | |nearest_promoter_id=NR_046310 | ||
|nearest_refseq=NM_032373 | |nearest_refseq=NM_032373 | ||
|nearest_unigene=Hs.500512 | |nearest_unigene=Hs.500512 | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=91220711 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000490164.1 uc031pwu.2 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106213.1 | |tss_id=hg_106213.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 22:09, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000490164.1 uc031pwu.2 |
|---|---|
| Distance: | 55 |
| Num_trans: | 7 |
| All_trans: | ENST00000490164.1:55 uc031pwu.2:55 ENST00000336126.5:60 uc001khi.5:60 AL832496:60 NR_046310:-110 NM_032373:-110 |
TATA-Box annotation
| Distance to TSS: | 118 |
|---|---|
| Nearest PromoterID: | NR_046310 |
| Entrez ID: | 84333 |
| Nearest Unigene: | Hs.500512 |
| Nearest Refseq: | NM_032373 |
| Nearest Ensembl: | ENSG00000180628 |
| Gene Name: | polycomb group ring finger 5 |
| Gene Alias: | RNF159 |
| Gene Description: | polycomb group ring finger 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
