Difference between revisions of "TSS:Hg 10623.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.13 |distance_to_tss=-298 |entrez_id=126917 |gc_percent=0.771144 |gene_alias=- |gene_description=intermediate filament family orphan 2 |gene_name=IFF...") |
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| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000455833.6:-48 uc001bbd.3:-48 NM_001136265:291 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| + | |distance=-48 | ||
|distance_to_tss=-298 | |distance_to_tss=-298 | ||
| + | |end=18956638 | ||
|entrez_id=126917 | |entrez_id=126917 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=intermediate filament family orphan 2 | |gene_description=intermediate filament family orphan 2 | ||
| − | |gene_name=IFFO2 | + | |gene_id=126917 |
| + | |gene_name=intermediate filament family orphan 2 | ||
| + | |gene_source=HGNC:27006 | ||
| + | |gene_symbol=IFFO2 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:27006 | ||
|nearest_ensembl=ENSG00000169991 | |nearest_ensembl=ENSG00000169991 | ||
|nearest_promoter_id=NM_001136265 | |nearest_promoter_id=NM_001136265 | ||
|nearest_refseq=NM_001136265 | |nearest_refseq=NM_001136265 | ||
|nearest_unigene=Hs.466625 | |nearest_unigene=Hs.466625 | ||
| + | |num_trans=3 | ||
| + | |species=human | ||
| + | |start=18956622 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000455833.6 uc001bbd.3 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10623.1 | |tss_id=hg_10623.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5TF58 | ||
}} | }} | ||
Revision as of 22:09, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000455833.6 uc001bbd.3 |
|---|---|
| Distance: | -48 |
| Num_trans: | 3 |
| All_trans: | ENST00000455833.6:-48 uc001bbd.3:-48 NM_001136265:291 |
TATA-Box annotation
| Distance to TSS: | -298 |
|---|---|
| Nearest PromoterID: | NM_001136265 |
| Entrez ID: | 126917 |
| Nearest Unigene: | Hs.466625 |
| Nearest Refseq: | NM_001136265 |
| Nearest Ensembl: | ENSG00000169991 |
| Gene Name: | intermediate filament family orphan 2 |
| Gene Alias: | - |
| Gene Description: | intermediate filament family orphan 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
