Difference between revisions of "TSS:Hg 106235.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.135 |distance_to_tss=19 |entrez_id=54708 |gc_percent=0.716418 |gene_alias=MARCH-V|MITOL|RNF153 |gene_description=membrane associated ring-CH-type fi...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |MITOL= | ||
| + | |RNF153= | ||
| + | |all_trans=ENST00000358935.2:0 NM_017824:0 uc001khx.1:0 AK309175:0 AK000452:0 AK294799:0 BC015480:0 AB191202:199 AB529108:287 JF432871:287 KJ894054:287 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| + | |distance=0 | ||
|distance_to_tss=19 | |distance_to_tss=19 | ||
| + | |end=92291208 | ||
|entrez_id=54708 | |entrez_id=54708 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
|gene_alias=MARCH-V|MITOL|RNF153 | |gene_alias=MARCH-V|MITOL|RNF153 | ||
|gene_description=membrane associated ring-CH-type finger 5 | |gene_description=membrane associated ring-CH-type finger 5 | ||
| − | |gene_name=5-Mar | + | |gene_id=54708 |
| + | |gene_name=membrane associated ring-CH-type finger 5 | ||
| + | |gene_source=HGNC:26025 | ||
| + | |gene_symbol=5-Mar | ||
| + | |gene_synonyms=FLJ20445 MARCH-V | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:26025 | ||
|nearest_ensembl=ENSG00000198060 | |nearest_ensembl=ENSG00000198060 | ||
|nearest_promoter_id=NM_017824 | |nearest_promoter_id=NM_017824 | ||
|nearest_refseq=NM_017824 | |nearest_refseq=NM_017824 | ||
|nearest_unigene=Hs.573490 | |nearest_unigene=Hs.573490 | ||
| + | |num_trans=11 | ||
| + | |species=human | ||
| + | |start=92291156 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000358935.2 NM_017824 uc001khx.1 AK309175 AK000452 AK294799 BC015480 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106235.1 | |tss_id=hg_106235.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DGV8 Q9NX47 | ||
}} | }} | ||
Revision as of 22:10, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000358935.2 NM_017824 uc001khx.1 AK309175 AK000452 AK294799 BC015480 |
|---|---|
| Distance: | 0 |
| Num_trans: | 11 |
| All_trans: | ENST00000358935.2:0 NM_017824:0 uc001khx.1:0 AK309175:0 AK000452:0 AK294799:0 BC015480:0 AB191202:199 AB529108:287 JF432871:287 KJ894054:287 |
TATA-Box annotation
| Distance to TSS: | 19 |
|---|---|
| Nearest PromoterID: | NM_017824 |
| Entrez ID: | 54708 |
| Nearest Unigene: | Hs.573490 |
| Nearest Refseq: | NM_017824 |
| Nearest Ensembl: | ENSG00000198060 |
| Gene Name: | membrane associated ring-CH-type finger 5 |
| Gene Alias: | MARCH-V |
| Gene Description: | membrane associated ring-CH-type finger 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
