Difference between revisions of "TSS:Hg 106274.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=2 |entrez_id=1592 |gc_percent=0.656716 |gene_alias=CP26|CYP26|P450RAI|P450RAI1 |gene_description=cytochrome P450 family 26 subfam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CYP26= | ||
| + | |P450RAI= | ||
| + | |P450RAI1= | ||
| + | |all_trans=ENST00000224356.4:0 NM_000783:0 uc001kil.3:0 AK075374:0 AF005418:12 BC156283:35 BC157063:35 ENST00000622925.1:180 uc057uwr.1:180 ENST00000371531.5:-411 NM_057157:-411 uc001kik.1:-411 AK027560:-411 ENST00000624589.3:414 uc057uws.1:414 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=0 | ||
|distance_to_tss=2 | |distance_to_tss=2 | ||
| + | |end=93073898 | ||
|entrez_id=1592 | |entrez_id=1592 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
|gene_alias=CP26|CYP26|P450RAI|P450RAI1 | |gene_alias=CP26|CYP26|P450RAI|P450RAI1 | ||
|gene_description=cytochrome P450 family 26 subfamily A member 1 | |gene_description=cytochrome P450 family 26 subfamily A member 1 | ||
| − | |gene_name=CYP26A1 | + | |gene_id=1592 |
| + | |gene_name=cytochrome P450 family 26 subfamily A member 1 | ||
| + | |gene_source=HGNC:2603 | ||
| + | |gene_symbol=CYP26A1 | ||
| + | |gene_synonyms=CP26 CYP26 P450RAI P450RAI1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2603 | ||
|nearest_ensembl=ENSG00000095596 | |nearest_ensembl=ENSG00000095596 | ||
|nearest_promoter_id=NM_000783 | |nearest_promoter_id=NM_000783 | ||
|nearest_refseq=NM_000783 | |nearest_refseq=NM_000783 | ||
|nearest_unigene=Hs.150595 | |nearest_unigene=Hs.150595 | ||
| + | |num_trans=15 | ||
| + | |species=human | ||
| + | |start=93073885 | ||
| + | |strand=+ | ||
|tata_box="-33(GCCTATAAAGCG,+,0.00)" | |tata_box="-33(GCCTATAAAGCG,+,0.00)" | ||
| + | |transcript_name=ENST00000224356.4 NM_000783 uc001kil.3 AK075374 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106274.1 | |tss_id=hg_106274.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=O43174 | ||
}} | }} | ||
Revision as of 22:11, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000224356.4 NM_000783 uc001kil.3 AK075374 |
|---|---|
| Distance: | 0 |
| Num_trans: | 15 |
| All_trans: | ENST00000224356.4:0 NM_000783:0 uc001kil.3:0 AK075374:0 AF005418:12 BC156283:35 BC157063:35 ENST00000622925.1:180 uc057uwr.1:180 ENST00000371531.5:-411 NM_057157:-411 uc001kik.1:-411 AK027560:-411 ENST00000624589.3:414 uc057uws.1:414 |
TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NM_000783 |
| Entrez ID: | 1592 |
| Nearest Unigene: | Hs.150595 |
| Nearest Refseq: | NM_000783 |
| Nearest Ensembl: | ENSG00000095596 |
| Gene Name: | cytochrome P450 family 26 subfamily A member 1 |
| Gene Alias: | CP26 |
| Gene Description: | cytochrome P450 family 26 subfamily A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-33(GCCTATAAAGCG,+,0.00)" |
