Difference between revisions of "TSS:Hg 106293.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=-51 |entrez_id=5146 |gc_percent=0.467662 |gene_alias=ACHM5|COD4|PDEA2 |gene_description=phosphodiesterase 6C |gene_name=PDE6C |g...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |COD4= | ||
| + | |PDEA2= | ||
| + | |all_trans=ENST00000371447.3:46 NM_006204:46 uc001kiu.5:46 U31973:46 BC111377:173 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=46 | ||
|distance_to_tss=-51 | |distance_to_tss=-51 | ||
| + | |end=93612542 | ||
|entrez_id=5146 | |entrez_id=5146 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
|gene_alias=ACHM5|COD4|PDEA2 | |gene_alias=ACHM5|COD4|PDEA2 | ||
|gene_description=phosphodiesterase 6C | |gene_description=phosphodiesterase 6C | ||
| − | |gene_name=PDE6C | + | |gene_id=5146 |
| + | |gene_name=phosphodiesterase 6C | ||
| + | |gene_source=HGNC:8787 | ||
| + | |gene_symbol=PDE6C | ||
| + | |gene_synonyms=ACHM5 COD4 PDEA2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:8787 | ||
|nearest_ensembl=ENSG00000095464 | |nearest_ensembl=ENSG00000095464 | ||
|nearest_promoter_id=NM_006204 | |nearest_promoter_id=NM_006204 | ||
|nearest_refseq=NM_006204 | |nearest_refseq=NM_006204 | ||
|nearest_unigene=Hs.658121 | |nearest_unigene=Hs.658121 | ||
| + | |num_trans=5 | ||
| + | |species=human | ||
| + | |start=93612532 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000371447.3 NM_006204 uc001kiu.5 U31973 | ||
| + | |tss_classification=no | ||
|tss_id=hg_106293.1 | |tss_id=hg_106293.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=P51160 | ||
}} | }} | ||
Revision as of 22:12, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000371447.3 NM_006204 uc001kiu.5 U31973 |
|---|---|
| Distance: | 46 |
| Num_trans: | 5 |
| All_trans: | ENST00000371447.3:46 NM_006204:46 uc001kiu.5:46 U31973:46 BC111377:173 |
TATA-Box annotation
| Distance to TSS: | -51 |
|---|---|
| Nearest PromoterID: | NM_006204 |
| Entrez ID: | 5146 |
| Nearest Unigene: | Hs.658121 |
| Nearest Refseq: | NM_006204 |
| Nearest Ensembl: | ENSG00000095464 |
| Gene Name: | phosphodiesterase 6C |
| Gene Alias: | ACHM5 |
| Gene Description: | phosphodiesterase 6C |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
