Difference between revisions of "TSS:Hg 106378.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=-7 |entrez_id=9849 |gc_percent=0.631841 |gene_alias=ZNF518 |gene_description=zinc finger protein 518A |gene_name=ZNF518A |gene_ty...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000618241.1:0 ENST00000539666.5:0 ENST00000478086.5:0 ENST00000624776.3:0 NM_001278525:0 uc057vce.1:0 uc057vcf.1:0 uc057vcg.1:0 uc031wpn.2:0 AK095317:0 BC030967:0 ENST00000563195.1:2 uc057vch.1:2 BC109046:-124 BC109045:-129 ENST00000488700.5:-293 uc057vcd.1:-293 BC011627:-300 ENST00000316045.9:-313 NM_014803:-313 NM_001278526:-313 NM_001278524:-313 uc031wpm.2:-313 CR627437:-313 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=0 | ||
|distance_to_tss=-7 | |distance_to_tss=-7 | ||
| + | |end=96130070 | ||
|entrez_id=9849 | |entrez_id=9849 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
|gene_alias=ZNF518 | |gene_alias=ZNF518 | ||
|gene_description=zinc finger protein 518A | |gene_description=zinc finger protein 518A | ||
| − | |gene_name=ZNF518A | + | |gene_id=9849 |
| + | |gene_name=zinc finger protein 518A | ||
| + | |gene_source=HGNC:29009 | ||
| + | |gene_symbol=ZNF518A | ||
| + | |gene_synonyms=KIAA0335 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:29009 | ||
|nearest_ensembl=ENSG00000177853 | |nearest_ensembl=ENSG00000177853 | ||
|nearest_promoter_id=NM_001278525 | |nearest_promoter_id=NM_001278525 | ||
|nearest_refseq=NM_014803 | |nearest_refseq=NM_014803 | ||
|nearest_unigene=Hs.600823 | |nearest_unigene=Hs.600823 | ||
| + | |num_trans=24 | ||
| + | |species=human | ||
| + | |start=96130027 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000618241.1 ENST00000539666.5 ENST00000478086.5 ENST00000624776.3 NM_001278525 uc057vce.1 uc057vcf.1 uc057vcg.1 uc031wpn.2 AK095317 BC030967 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106378.1 | |tss_id=hg_106378.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A087WWK1 Q6AHZ1 | ||
}} | }} | ||
Revision as of 22:16, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000618241.1 ENST00000539666.5 ENST00000478086.5 ENST00000624776.3 NM_001278525 uc057vce.1 uc057vcf.1 uc057vcg.1 uc031wpn.2 AK095317 BC030967 |
|---|---|
| Distance: | 0 |
| Num_trans: | 24 |
| All_trans: | ENST00000618241.1:0 ENST00000539666.5:0 ENST00000478086.5:0 ENST00000624776.3:0 NM_001278525:0 uc057vce.1:0 uc057vcf.1:0 uc057vcg.1:0 uc031wpn.2:0 AK095317:0 BC030967:0 ENST00000563195.1:2 uc057vch.1:2 BC109046:-124 BC109045:-129 ENST00000488700.5:-293 uc057vcd.1:-293 BC011627:-300 ENST00000316045.9:-313 NM_014803:-313 NM_001278526:-313 NM_001278524:-313 uc031wpm.2:-313 CR627437:-313 |
TATA-Box annotation
| Distance to TSS: | -7 |
|---|---|
| Nearest PromoterID: | NM_001278525 |
| Entrez ID: | 9849 |
| Nearest Unigene: | Hs.600823 |
| Nearest Refseq: | NM_014803 |
| Nearest Ensembl: | ENSG00000177853 |
| Gene Name: | zinc finger protein 518A |
| Gene Alias: | ZNF518 |
| Gene Description: | zinc finger protein 518A |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
